View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18585_low_3 (Length: 339)
Name: NF18585_low_3
Description: NF18585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18585_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 35035874 - 35036178
Alignment:
| Q |
19 |
agtcaatcaattacaatcactctattttatgccaacacaatatttactggattttcaacgaggtatctgattcccacatcttttgcaacttattgtctga |
118 |
Q |
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| T |
35035874 |
agtcaatcaattacaatcactctattttatggcaacacaatatttactggattttcaataaggtatctgattcccacatcttttgcaacttattgtctga |
35035973 |
T |
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| Q |
119 |
cttcaaaaaacactgagannnnnnnnnnnnnnnnngaccttaacttggtcgaaatctaccccgtcttttcaaagattctaactcaactgagtcctttgag |
218 |
Q |
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| T |
35035974 |
cttcaaaaaacgttgagattttttttttaaaaaa-gaccttaacttggtcgaaatctaccccgtcttttcaaagattctgactcaactgagtcctttgag |
35036072 |
T |
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| Q |
219 |
gagtcaagtgtttaatgtctctttagacctattttgagtaaaagtttctttccattattggaccaattacaatcaaaagactgattttgtatctggcgga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35036073 |
gagtcaagtgtttaatgtctctttagacctattttgagtaaaagtttctttccattattcgaccaattacaatcaaaagactgattttgtatctggcgga |
35036172 |
T |
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| Q |
319 |
tacaaa |
324 |
Q |
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|||||| |
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| T |
35036173 |
tacaaa |
35036178 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 25656259 - 25656205
Alignment:
| Q |
180 |
cgtcttttcaaagattctaactcaactgagtcctttgaggagtcaagtgtttaat |
234 |
Q |
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| T |
25656259 |
cgtcttctcaaagattcttgctcacctgagtcctttgaggagtcaaatatttaat |
25656205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 33707445 - 33707401
Alignment:
| Q |
199 |
actcaactgagtcctttgaggagtcaagtgtttaatgtctcttta |
243 |
Q |
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| T |
33707445 |
actcaactaagttctttaaggaatcaagtgtttaatgtctcttta |
33707401 |
T |
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