View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_high_11 (Length: 412)
Name: NF18586_high_11
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 42630319 - 42629910
Alignment:
| Q |
1 |
taacgtgtctccaatggcacagttgattgtgaattgggtactaactacattaagctatcccttattgttagttttgatggttttggctgtgaaagagaac |
100 |
Q |
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| T |
42630319 |
taacgtgtctccaatggcacagttgattgtcaattgggtactaactacattaagctatcccttattgttagttttgatggttttggctgtgaaagagagc |
42630220 |
T |
|
| Q |
101 |
aatgaggaagtggaggaacctgtgaaacaagttgctccttcagataacaatgggtctgtccattgactgcactagtatatcccctttggattaaaaaatc |
200 |
Q |
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| T |
42630219 |
aatgaggaagtggaggaacctgtcaaacaagttgctccttcagataacaatgggtctgtccattgactgtactagtatatcctctttggattaaaaaatc |
42630120 |
T |
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| Q |
201 |
aaagaatca---------------tttgttatcattgttagaagttcctataatcatgtttaatta-nnnnnnnngggggaaaattcactttcatatata |
284 |
Q |
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| T |
42630119 |
aaagaatcatttggttgtcttctttttgttatcattgttagaagttcccataatcatgtttaattattttttttggggggaaaattcactttcatatata |
42630020 |
T |
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| Q |
285 |
aatttgagctaagggttatgggagtttgaaagtcccgaattcaaaaccaaataaaggagnnnnnnnctagtctattaatctaaaaactaatctctcccac |
384 |
Q |
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| T |
42630019 |
aatttgagctaagggttatgggagtttgaaagtcccgaattcaaaaccaaataaaggagaaaaaaactagtctattaatctaaaaactaatctctcccac |
42629920 |
T |
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| Q |
385 |
tctcattgct |
394 |
Q |
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| T |
42629919 |
tctcattgct |
42629910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 42637198 - 42637103
Alignment:
| Q |
8 |
tctccaatggcacagttgattgtgaattgggtactaactacattaagctatcccttattgttagttttgatggttttggctgtgaaagagaacaat |
103 |
Q |
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||||||||| |||||||||||||||||||||| || |||||| |||||||||| |||||||| ||||| ||| |||||| |||||||||| ||||| |
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| T |
42637198 |
tctccaatgacacagttgattgtgaattgggtgctcactacactaagctatccgttattgttggttttaatgattttggttgtgaaagaggacaat |
42637103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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