View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18586_high_12 (Length: 365)

Name: NF18586_high_12
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18586_high_12
NF18586_high_12
[»] chr7 (8 HSPs)
chr7 (1-350)||(6094714-6095063)
chr7 (38-237)||(6089442-6089641)
chr7 (173-344)||(6213325-6213496)
chr7 (174-335)||(6208483-6208644)
chr7 (157-344)||(6237773-6237960)
chr7 (173-245)||(6180990-6181062)
chr7 (44-245)||(6247811-6248012)
chr7 (174-323)||(6106527-6106676)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 6095063 - 6094714
Alignment:
Q  1 atgaataatttaaatgacattgaggtaaataaattgatcaaagatatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  6095063 atgaataatttaaatgacattgaggtaaataaattgatcaaagatatgaaacgacacaagaaagaaaagcctctcattttgtcgactgaatttgttggag 6094964  T
Q  101 aaacattatacataaatatcgaccaagtgttgagacttctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaacttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094963 aaacattatacataaatatcgaccaagtgttgagacttctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaacttt 6094864  T
Q  201 acttgcaactcttgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttcttccaatttcagcttatcaaaacttcaa 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094863 acttgcaactcttgtggagaatgaagtaaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttcttccaatttcagcttatcaaaacttcaa 6094764  T
Q  301 tttgatattgcaaaaagaataggtgtaaaacttgaagatgatgaagaaga 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094763 tttgatattgcaaaaagaataggtgtaaaacttgaagatgatgaagaaga 6094714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 38 - 237
Target Start/End: Complemental strand, 6089641 - 6089442
Alignment:
Q  38 tcaaagatatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggagaaacattatacataaatatcgaccaagtgttgagact 137  Q
    ||||||||||||||| ||||||| ||||||| ||||||| |||||| || |||||||||||  || ||||| || | ||||||    ||||| | | |||    
T  6089641 tcaaagatatgaaacgacacaaggaagaaaaacctctcactttgtcgacagaatttgttgggaaagcattagactttaatatcaggaaagtgcttaaact 6089542  T
Q  138 tctagaggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaa 237  Q
    ||||||||| ||| | || ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  6089541 tctagaggatgaccaagtttttgttattggtatatatggaatggggggagtgggaaaaactttacttgcaactctcgtcgagaatgaagtaaaaaggaaa 6089442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 173 - 344
Target Start/End: Complemental strand, 6213496 - 6213325
Alignment:
Q  173 atggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttc 272  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||  |  ||||||||| | |||  |||||    
T  6213496 atggaatgggaggagtgggaaaaactttacttgcaactctcgtggaaaatgaagtaaaaaggaaagcaacttttaagcatgtgttttgggtcactgtttc 6213397  T
Q  273 ttccaatttcagcttatcaaaacttcaatttgatattgcaaaaagaataggtgtaaaacttgaagatgatga 344  Q
    |  ||||| |||| | |||||| | |||  |||||||||||||||||||||||| || ||||| || |||||    
T  6213396 tcacaattacagcatctcaaaattgcaacatgatattgcaaaaagaataggtgtgaagcttgatgaagatga 6213325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 335
Target Start/End: Complemental strand, 6208644 - 6208483
Alignment:
Q  174 tggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttct 273  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| || |||  |  ||||||||| | |||  ||||||    
T  6208644 tggaatgggaggagtcggaaaaactttacttgcaactcttgtggagaatgaagtaaaaaggaaagcaagttttaaggatgtgttttgggtcactgtttct 6208545  T
Q  274 tccaatttcagcttatcaaaacttcaatttgatattgcaaaaagaataggtgtaaaacttga 335  Q
      |||||  ||| | |||||||| |||  |||||| ||||||||||||||||| || |||||    
T  6208544 cacaattatagcatctcaaaactgcaaaatgatatagcaaaaagaataggtgtgaagcttga 6208483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 157 - 344
Target Start/End: Complemental strand, 6237960 - 6237773
Alignment:
Q  157 tttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgt 256  Q
    ||||||||||| ||   ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |  ||||||    
T  6237960 tttgttattggcatatgtggaatgggaggagtcggaaaaactttacttgcaactctcgtggagaatgaagtaaaaaggaaagcaacttttaaggatgtgt 6237861  T
Q  257 ttttgatcaacgtttcttccaatttcagcttatcaaaacttcaatttgatattgcaaaaagaataggtgtaaaacttgaagatgatga 344  Q
    ||| | |||  ||||||  |||||  ||| | |||||||| |||  |||||| ||||||| ||||||||| || ||||| || |||||    
T  6237860 tttgggtcactgtttctcacaattatagcatctcaaaactgcaacatgatatagcaaaaataataggtgtgaagcttgatgaagatga 6237773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 6181062 - 6180990
Alignment:
Q  173 atggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaacttt 245  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  6181062 atggaatgggaggagtaggaaaaactttacttgcaactctcgtggagaatgaagtaaaaaggaaagcaacttt 6180990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 245
Target Start/End: Complemental strand, 6248012 - 6247811
Alignment:
Q  44 atatgaaactacacaagaaagaaaagcctctcattttgtcaactgaatttgttggagaaacattatacataaatatcgaccaagtgttgagacttctaga 143  Q
    ||||||||| |||||||||| | |||||| ||| |||||||||||||||||| || |  | |||| |   ||| ||| |  ||||||||| ||  || ||    
T  6248012 atatgaaacgacacaagaaaaagaagcctttcactttgtcaactgaatttgtcggggggagattagatgaaaaaatccataaagtgttgaaacaacttga 6247913  T
Q  144 ggaagacgatgtatttgttattggtatccatggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaact 243  Q
     || ||  | || ||||| ||||| ||  |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  6247912 cgatgataaagtctttgtcattggcatatatggaatgggaggagtaggaaaaactttacatgcaactctcgtggagaatgaagtaaaaaggaaagcaact 6247813  T
Q  244 tt 245  Q
    ||    
T  6247812 tt 6247811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 323
Target Start/End: Complemental strand, 6106676 - 6106527
Alignment:
Q  174 tggaatgggaggagtgggaaaaactttacttgcaactcttgtggagaatgaagtcaaaaggaaaggaactttcgacaatgtgtttttgatcaacgtttct 273  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||||  |||||||||  ||||||  |  ||||| ||| |||||  ||||||    
T  6106676 tggaatgggaggtgtgggaaaaactttacttgcaactctcgtggagaaggaaggaaaaaggaaaccaacttttaaggatgtgatttggatcactgtttct 6106577  T
Q  274 tccaatttcagcttatcaaaacttcaatttgatattgcaaaaagaatagg 323  Q
      ||||   ||| | |||||||| |||  |||||| ||||||||||||||    
T  6106576 cacaatcatagcatctcaaaactccaacatgatatagcaaaaagaatagg 6106527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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