View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_high_14 (Length: 349)
Name: NF18586_high_14
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 3208862 - 3209025
Alignment:
| Q |
9 |
gaaatgaagtggacttccattttgtcagaaaaaagaatgagataaacaaaaaagaaggaatctatctataatatgctnnnnnnn-gggatctgtaataaa |
107 |
Q |
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| T |
3208862 |
gaaatgaagtggacttccattttgtcagaaaaaagaatgagataaacaaaatagaaggaatctatctataatatgctaaaaaaaagggatctgtaataaa |
3208961 |
T |
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| Q |
108 |
agctgaattgctaaattggatacaaaattacaaatcatcatctaacgaatcagatctcaatcag |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208962 |
agctgaattgctaaattggatacaaaattacaaatcatcatctaacgaatcagatctcaatcag |
3209025 |
T |
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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 288 - 333
Target Start/End: Original strand, 3209152 - 3209197
Alignment:
| Q |
288 |
aaagaatcacatcagaatcattctcttctcacatggtagtaattaa |
333 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3209152 |
aaagaatcacttcagaatcattctcttctcacatggtagtaattaa |
3209197 |
T |
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