View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_high_18 (Length: 317)
Name: NF18586_high_18
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 3856579 - 3856883
Alignment:
| Q |
1 |
caagggcaaactttaacctctgttggactttatttgccaaggccagtatttactcatggccaactttacgtttgataaacctgcattggtgctgtttctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856579 |
caagggcaaactttaacctctgttggactttatttgccaaggccagtatttactcatggccaactttacgtttgataaacctgcattggtgctgtttctg |
3856678 |
T |
|
| Q |
101 |
gatttctcggtgtaatttgtatttctccgttttggattggtggtctgacctcaagtgtgtctgctatatggtttatttccttaggtttatcaaactgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3856679 |
gatttctcggtgtaatttgtatttctccgttttggattggtggtctgacctcaagtgtgtctgctatatggtttatttccttaggtttatcaaactgtta |
3856778 |
T |
|
| Q |
201 |
cttcatctta----ttatgaacaatgtttatgtgttctatcaatgcccctgcgtttgtttctgttatataaataggtaaagcattgctgctgtgttattg |
296 |
Q |
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| T |
3856779 |
cttcatcttattatttatgaacaatgtttatgtgttctatcgatgcccctgcgtttgtttctgttatataattaggtaaagcattgttgctgtgttattg |
3856878 |
T |
|
| Q |
297 |
gagct |
301 |
Q |
| |
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||||| |
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| T |
3856879 |
gagct |
3856883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 81 - 298
Target Start/End: Original strand, 46471950 - 46472167
Alignment:
| Q |
81 |
ctgcattggtgctgtttctggatttctcggtgtaatttgtatttctccgttttggattggtggtctgacctcaagtgtgtctgctatatggtttatttcc |
180 |
Q |
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| T |
46471950 |
ctgcattgatgctgtttctggatttcttggtgtaatttgtatttctccgttttggatctgtggtctgacctgaagtgtgtctgctatatggtttatttcc |
46472049 |
T |
|
| Q |
181 |
ttaggtttatcaaactgttacttcatcttattatgaacaatgtttatgtgttctatcaatgcccctgcgtttgtttctgttatataaataggtaaagcat |
280 |
Q |
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| T |
46472050 |
ttaggtttatccaaatgttgcttcatcttattatgaccattgtttatgtgttctatagatgcccctgcgtttcttttagttatataaataggtaaagcag |
46472149 |
T |
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| Q |
281 |
tgctgctgtgttattgga |
298 |
Q |
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|||||||||||| ||||| |
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| T |
46472150 |
tgctgctgtgttgttgga |
46472167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46471611 - 46471682
Alignment:
| Q |
1 |
caagggcaaactttaacctctgttggactttatttgccaaggccagtatttactcatggccaactttacgtt |
72 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46471611 |
caaggtcaaactttaacctctgttggactttatttgccaaggccagtatttactcatggccaactttacgtt |
46471682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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