View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18586_high_4 (Length: 582)
Name: NF18586_high_4
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 43 - 565
Target Start/End: Complemental strand, 24483002 - 24482461
Alignment:
| Q |
43 |
caatgtaagactctcaacaaaattctcatactcaggactagacatatatgggcggaacttaactcaacttccttgtaacactactacatatataactatc |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24483002 |
caatgtaagactctcaacaaaattctcatactcaggactagacatatatgggtggaacttaactcaacttccttgtaacactactacatatataactatc |
24482903 |
T |
|
| Q |
143 |
agtaacattgaaccggtagtatccatagaaatgttactatttaatatccatagctattggttatgtagtgagaagactaataaaggtagagcaaaattta |
242 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
24482902 |
aataacattgaaccggtaatatccatagaaatgttactatttaatatccatagctattggttatgtagtcagaagactaataaatgtagagcaaaattta |
24482803 |
T |
|
| Q |
243 |
caagtagacacactagtggnnnnnnnnnnnnctcatgcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttgttgtcta |
342 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
24482802 |
caagtagacacactagtgg--aaaaaaaaaactcatgc-aaaatatttgatgaagaggtaatattgttgctgtgttatgcaatttttgtcttcttgtcta |
24482706 |
T |
|
| Q |
343 |
tgtttggactcgtgctagctgttgtatcagagcaacattagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgttt |
442 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24482705 |
tgtttggactcgtgctaactgttgtatcatagcaacattagtttttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgttt |
24482606 |
T |
|
| Q |
443 |
gttttaataaaattgtgattttgatcaatcttg---ttattattatagggtaatgacattcttcaattggat-------------------tgattcttg |
520 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24482605 |
gtttcaataaaattgtgattttgatcaatcttgttattattattatagggtaatgacattcttcaattggattggctgtccaatattgtgatgattcttg |
24482506 |
T |
|
| Q |
521 |
tcatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatc |
565 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24482505 |
tgatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatc |
24482461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 358 - 513
Target Start/End: Original strand, 14150239 - 14150392
Alignment:
| Q |
358 |
tagctgttgtatcagagcaacattagttcttagactactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattg |
457 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||||||||| |||| || ||||| | ||| |||||||||||||||| ||||||| |||||||| || |
|
|
| T |
14150239 |
tagctgttgtatcagagaaacattggtttttagactacttttgctttaaggtgttagtatgaggatcagaacctaagtt--gtttgttataataaaagtg |
14150336 |
T |
|
| Q |
458 |
tgattttgatcaatcttgttattattatagggtaatgacattcttcaattggattg |
513 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
14150337 |
tgattttgatcaatcttgttattattacacggcaatgacattcttcaattggattg |
14150392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 392 - 508
Target Start/End: Complemental strand, 14151402 - 14151286
Alignment:
| Q |
392 |
ctactttttctttgagatgttactgtgaagatcagaacctaagttttgtttgttttaataaaattgtgattttgatcaatcttgttattattatagggta |
491 |
Q |
| |
|
|||||||| ||||||| ||||||| | |||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| || |||| | |
|
|
| T |
14151402 |
ctacttttgctttgaggtgttactataaagatcagaacctaagttttgtctattttaataaaagtgtgattttgatcaatcttgttattactacagggca |
14151303 |
T |
|
| Q |
492 |
atgacattcttcaattg |
508 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
14151302 |
atgacattctttaattg |
14151286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 512 - 565
Target Start/End: Original strand, 14150411 - 14150464
Alignment:
| Q |
512 |
tgattcttgtcatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatc |
565 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14150411 |
tgattcttgtgatgagaatctcacagtgaaaaaagtggagcaacaaccatcatc |
14150464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 512 - 565
Target Start/End: Complemental strand, 14151263 - 14151210
Alignment:
| Q |
512 |
tgattcttgtcatgagtatctcacagtgaaaaaagtgaagcaacaaccatcatc |
565 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
14151263 |
tgattcttgagatgagaatctcactgtgaaaaaagtggagcaacaaccatcatc |
14151210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 479
Target Start/End: Original strand, 42713933 - 42713968
Alignment:
| Q |
444 |
ttttaataaaattgtgattttgatcaatcttgttat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
42713933 |
ttttaataaaattgtgattttgatcaatcttgttat |
42713968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 27968899 - 27968967
Alignment:
| Q |
274 |
ctcatgcaaaaatatttgatgaagaggtaatattgttgttgtgttatgcaatttttgtcttgttgtctatgt |
345 |
Q |
| |
|
|||||||| |||||| |||||||||||| || ||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
27968899 |
ctcatgcagaaatatgtgatgaagaggtgat---gttgttgtgttctgcagtttttctcttgttgtctatgt |
27968967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 23263803 - 23263863
Alignment:
| Q |
126 |
ctacatatataactatcagtaacattgaaccggtagtatccatagaaatgttactatttaa |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| | | ||||||||||||||||||| |
|
|
| T |
23263803 |
ctacatatataactattagtaacattgaacaggtaagcttcttagaaatgttactatttaa |
23263863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University