View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_high_6 (Length: 443)
Name: NF18586_high_6
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 112 - 409
Target Start/End: Original strand, 49224932 - 49225229
Alignment:
| Q |
112 |
taccgtaaataactcagttgaaggacgttgccgtataccttattcatcttaagtgagaaatttatatccattaaacgattggacnnnnnnnttaagaacc |
211 |
Q |
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| T |
49224932 |
taccgtaaataactcagttgaaggacgttgccgtataccttattcatcttaagtgagaaatttatatccattaaacgattggacaaaaaaattaagaacc |
49225031 |
T |
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| Q |
212 |
aaatttatatgatcatatacaatttcaacaattgatttgagtatttacgtcatacataaaaggagtgcacaaaattctaatttctaaattattagtttga |
311 |
Q |
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| T |
49225032 |
aaatttatatgatcatatacaatttcaacaattgatttgagtatttacgtcatacataaaaggagtgcacaaaattctaatttctaaattattagtttga |
49225131 |
T |
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| Q |
312 |
ttttttaaaagtcaatacttctattctctcaacaaaatgtatgatgctctaatattcttcaaccgttgattcttctctattcatgtactgcgttattt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49225132 |
ttttttaaaagtcaatacttctattctctcaacaaaatgtatgatgctctcatattcttcaaccgttgattcttctctattcatgtactgcgttattt |
49225229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 49224845 - 49224933
Alignment:
| Q |
1 |
aagaggaaattaaaatatcttattttgtacgtgaaatctaggtttatcccaacctacccactttatttaaatgattttaatcattttgta |
90 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49224845 |
aagaggaaattaaa-tatcttattttgtacgtgaaatctaggtttatcccaacctacccactttatttaaatgattttaatcattttgta |
49224933 |
T |
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