View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18586_high_8 (Length: 436)
Name: NF18586_high_8
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 41952712 - 41952301
Alignment:
| Q |
7 |
ggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttcaatgaagaagacgaagcagccagagcctatgacatagccgccttgagattcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952712 |
ggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttcaatgaagaagacgaagcagccagagcctatgacatagccgccttgagattcc |
41952613 |
T |
|
| Q |
107 |
gtggaaaagatgccgttacaaattctaaaagtctcaccggcgttggtaacgacgccgacgaaggtgaaactgagtttctgaattcacattctaagtcgga |
206 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952612 |
gtggaaaagatgctgttacaaattctaaaagtctcactggcgttggtaacgacgccgacgaaggtgaaactgagtttctgaattcacattctaagtcgga |
41952513 |
T |
|
| Q |
207 |
gattgttgatatgcttcggaaacacacctacgatgacgagcttaagcaaagcatgcgtgacatgagcggtggaagacagcggcgtaacggagaattgaat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41952512 |
gattgttgatatgcttcggaaacacacctacgatgacgagcttaagcaaagcatgcgtgacatgagcggtggaagacagcggcgtaacggagaattgaat |
41952413 |
T |
|
| Q |
307 |
ggtgcggtttcacgtggcgcgtgtgatgctaaagcgcgtgagcagttgtttgagaaaacggttacgccgagtgacgtagggaagttgaatcggttggtga |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41952412 |
ggtgcggtttcacgtggcgcgtgtgatgctaaagcgcgtgagcagttgtttgagaaaacggttacgccgagtgacgtggggaagttgaatcggttggtga |
41952313 |
T |
|
| Q |
407 |
taccgaaacagc |
418 |
Q |
| |
|
|||||||||||| |
|
|
| T |
41952312 |
taccgaaacagc |
41952301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 22189823 - 22189887
Alignment:
| Q |
7 |
ggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttcaatgaagaagacgaagc |
71 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| || || || ||||||||||||| |
|
|
| T |
22189823 |
ggagcacagatttacgaaaagcaccagcgtgtgtggcttggaacatttaaccaagaagacgaagc |
22189887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University