View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18586_low_1 (Length: 969)

Name: NF18586_low_1
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18586_low_1
NF18586_low_1
[»] chr8 (17 HSPs)
chr8 (20-499)||(39890311-39890784)
chr8 (814-891)||(39890780-39890857)
chr8 (378-440)||(1875604-1875666)
chr8 (378-440)||(44761506-44761568)
chr8 (390-440)||(7172968-7173018)
chr8 (376-440)||(39482655-39482719)
chr8 (378-440)||(21216113-21216175)
chr8 (376-440)||(31082659-31082723)
chr8 (376-438)||(7703170-7703232)
chr8 (378-439)||(41092036-41092097)
chr8 (378-438)||(11976950-11977010)
chr8 (378-429)||(9300136-9300187)
chr8 (602-661)||(18254439-18254498)
chr8 (378-440)||(5053165-5053227)
chr8 (390-440)||(44648544-44648594)
chr8 (378-440)||(45425678-45425740)
chr8 (395-440)||(39405821-39405866)
[»] chr3 (24 HSPs)
chr3 (895-950)||(39421959-39422014)
chr3 (895-946)||(21007208-21007259)
chr3 (378-440)||(43253874-43253936)
chr3 (375-440)||(10366653-10366718)
chr3 (378-440)||(37311992-37312054)
chr3 (376-440)||(8679065-8679129)
chr3 (376-440)||(27471375-27471439)
chr3 (378-440)||(30190671-30190733)
chr3 (378-440)||(37695677-37695739)
chr3 (381-440)||(51837970-51838029)
chr3 (378-440)||(11632123-11632185)
chr3 (378-440)||(14194597-14194659)
chr3 (378-440)||(23004393-23004455)
chr3 (376-440)||(5322948-5323012)
chr3 (381-440)||(1778687-1778746)
chr3 (381-440)||(3901160-3901219)
chr3 (378-429)||(44301604-44301655)
chr3 (378-440)||(11905864-11905926)
chr3 (378-440)||(12736583-12736645)
chr3 (378-440)||(19823053-19823115)
chr3 (378-440)||(24569111-24569173)
chr3 (378-440)||(29023977-29024038)
chr3 (378-440)||(34750538-34750600)
chr3 (378-423)||(3313296-3313341)
[»] chr1 (20 HSPs)
chr1 (895-950)||(29942897-29942952)
chr1 (378-440)||(28749033-28749095)
chr1 (378-440)||(39864153-39864215)
chr1 (378-438)||(14757610-14757670)
chr1 (378-440)||(6160473-6160535)
chr1 (378-440)||(12039124-12039186)
chr1 (376-438)||(23169009-23169071)
chr1 (378-440)||(9307669-9307731)
chr1 (372-440)||(32970581-32970649)
chr1 (378-428)||(44707786-44707836)
chr1 (378-440)||(49224000-49224062)
chr1 (378-438)||(7759257-7759317)
chr1 (392-438)||(12151232-12151278)
chr1 (378-440)||(15699164-15699226)
chr1 (378-440)||(31042839-31042901)
chr1 (378-440)||(36701963-36702025)
chr1 (378-440)||(36718067-36718129)
chr1 (378-440)||(40144861-40144923)
chr1 (378-440)||(17988572-17988636)
chr1 (251-324)||(37643273-37643346)
[»] chr5 (21 HSPs)
chr5 (378-440)||(40530233-40530295)
chr5 (378-438)||(4818593-4818653)
chr5 (378-436)||(2232086-2232144)
chr5 (378-440)||(8725018-8725080)
chr5 (379-440)||(9515789-9515850)
chr5 (378-438)||(6615891-6615951)
chr5 (378-440)||(27542837-27542899)
chr5 (378-440)||(27580642-27580704)
chr5 (378-440)||(29374384-29374446)
chr5 (378-440)||(32440183-32440245)
chr5 (378-419)||(41062190-41062231)
chr5 (378-438)||(7827937-7827997)
chr5 (392-440)||(37184088-37184136)
chr5 (378-440)||(6315786-6315848)
chr5 (382-440)||(11904252-11904310)
chr5 (378-440)||(15439328-15439390)
chr5 (378-437)||(15818492-15818553)
chr5 (378-440)||(40899960-40900022)
chr5 (251-324)||(2557465-2557538)
chr5 (378-423)||(6753684-6753729)
chr5 (378-435)||(29856089-29856146)
[»] chr4 (34 HSPs)
chr4 (378-440)||(34360697-34360759)
chr4 (378-440)||(46396900-46396962)
chr4 (378-440)||(47464382-47464444)
chr4 (378-440)||(2942662-2942723)
chr4 (250-324)||(25734770-25734844)
chr4 (378-440)||(32884843-32884905)
chr4 (390-440)||(6643677-6643727)
chr4 (382-440)||(40122871-40122929)
chr4 (376-440)||(3689602-3689666)
chr4 (376-440)||(16821348-16821412)
chr4 (379-423)||(38663481-38663525)
chr4 (388-440)||(51625135-51625187)
chr4 (378-440)||(2653462-2653524)
chr4 (378-440)||(11907616-11907678)
chr4 (378-440)||(17114482-17114544)
chr4 (378-440)||(36985828-36985890)
chr4 (392-438)||(49747017-49747063)
chr4 (382-439)||(2158018-2158075)
chr4 (378-423)||(53346801-53346846)
chr4 (378-438)||(17237315-17237375)
chr4 (380-440)||(32469965-32470025)
chr4 (376-440)||(42517655-42517719)
chr4 (378-438)||(47773038-47773098)
chr4 (240-303)||(12567330-12567392)
chr4 (378-437)||(26147635-26147694)
chr4 (378-440)||(4972602-4972664)
chr4 (378-440)||(28500908-28500970)
chr4 (378-440)||(35311240-35311302)
chr4 (390-440)||(35380350-35380400)
chr4 (378-440)||(49175951-49176013)
chr4 (378-440)||(52859816-52859878)
chr4 (395-440)||(7061681-7061726)
chr4 (372-429)||(7987010-7987067)
chr4 (378-435)||(50264102-50264159)
[»] chr7 (25 HSPs)
chr7 (372-440)||(33819257-33819325)
chr7 (378-440)||(29835432-29835494)
chr7 (378-440)||(41506083-41506145)
chr7 (376-440)||(5524427-5524491)
chr7 (378-437)||(11373449-11373508)
chr7 (379-438)||(23670536-23670595)
chr7 (378-440)||(7463262-7463324)
chr7 (894-944)||(19827619-19827669)
chr7 (378-440)||(34947549-34947611)
chr7 (378-439)||(37245739-37245799)
chr7 (378-440)||(83434-83496)
chr7 (378-440)||(24516307-24516369)
chr7 (378-440)||(27921037-27921099)
chr7 (378-440)||(38391797-38391859)
chr7 (378-440)||(47045472-47045533)
chr7 (378-438)||(21350645-21350705)
chr7 (376-440)||(30866014-30866078)
chr7 (392-440)||(34100565-34100613)
chr7 (364-403)||(47254951-47254990)
chr7 (378-420)||(21937825-21937867)
chr7 (376-434)||(32346076-32346134)
chr7 (378-440)||(40076364-40076426)
chr7 (378-440)||(42935710-42935772)
chr7 (376-429)||(31327480-31327533)
chr7 (267-324)||(33775982-33776039)
[»] scaffold0302 (1 HSPs)
scaffold0302 (378-440)||(16140-16202)
[»] chr2 (10 HSPs)
chr2 (378-428)||(39329685-39329735)
chr2 (378-440)||(39691532-39691594)
chr2 (382-440)||(43115811-43115869)
chr2 (376-440)||(8947061-8947125)
chr2 (378-440)||(5789657-5789719)
chr2 (378-440)||(15359096-15359158)
chr2 (378-440)||(16463731-16463793)
chr2 (378-440)||(45235623-45235685)
chr2 (378-440)||(35313929-35313991)
chr2 (378-440)||(41220955-41221017)
[»] scaffold0294 (1 HSPs)
scaffold0294 (376-440)||(17075-17139)
[»] chr6 (18 HSPs)
chr6 (378-440)||(1781844-1781906)
chr6 (378-440)||(3720251-3720313)
chr6 (378-440)||(23142709-23142771)
chr6 (378-440)||(24983459-24983521)
chr6 (391-440)||(31894220-31894269)
chr6 (376-440)||(13087570-13087634)
chr6 (386-440)||(1063613-1063667)
chr6 (378-420)||(8115068-8115110)
chr6 (250-324)||(12307738-12307812)
chr6 (378-440)||(15058159-15058221)
chr6 (378-439)||(1955990-1956051)
chr6 (376-439)||(11143597-11143661)
chr6 (250-313)||(27823208-27823271)
chr6 (378-440)||(11655956-11656018)
chr6 (378-440)||(13909466-13909528)
chr6 (378-440)||(32440655-32440717)
chr6 (378-415)||(8695087-8695124)
chr6 (392-429)||(28101380-28101417)
[»] scaffold0018 (1 HSPs)
scaffold0018 (376-429)||(136059-136112)
[»] scaffold0583 (1 HSPs)
scaffold0583 (378-440)||(2067-2129)
[»] scaffold0159 (1 HSPs)
scaffold0159 (378-440)||(34030-34092)
[»] scaffold0012 (1 HSPs)
scaffold0012 (378-440)||(105726-105788)
[»] scaffold1809 (1 HSPs)
scaffold1809 (389-438)||(697-746)
[»] scaffold0095 (1 HSPs)
scaffold0095 (395-440)||(50263-50308)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 39890311 - 39890784
Alignment:
Q  20 cgacacattttcatggcaatcgactatctaaaaagagaaaacatgtaacnnnnnnnctttctatttcagacaagtagttgggagggatcgagacgaaacg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||     
T  39890311 cgacacattttcatggcaatcgactatctaaaaagagaaaacatgtaactttttttctttctatttcagacaagtagttgggagggatcgagacgaaaca 39890410  T
Q  120 agcaacttttacaccccgtacatttctaaaaaattaaattag-tttacannnnnnnnnnnnngaaagattaaattagttttacatgtacatattagaatg 218  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||             |||||||||||| |||||||||||||||||||||||||    
T  39890411 agcaacttttgcaccccgtacatttctaaaaaattaaattagttttaca---ttttttttttgaaagattaaatcagttttacatgtacatattagaatg 39890507  T
Q  219 acataatttgtnnnnnnnntgcactttctcggtctcattttaattttcactttaacatt-tcttttatatttaaaaataattgtcactttaaaatactaa 317  Q
    |||||||||||        |||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  39890508 acataatttgt--aaaaaatgcactttctcggtctca-tttaattttcactttaacattgttttttatatttaaaaataattgtcactttaaaatactaa 39890604  T
Q  318 tataacannnnnnnnnccactaatatacttttatttattgaattcaactctatgaacaataattaataagagtgttttagtaaatgctactaattttatc 417  Q
    |||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||     
T  39890605 tataaca--tttttttccactaatatacttttatttattgaattcaactttatgaacaataattaataagaatgttttagtaaatgctactaattttatt 39890702  T
Q  418 attgaagtcaactcaattaatcannnnnnnaaaaaccgcgcacagctctaaagagagaattaaaatgagagggagtgtattt 499  Q
    |||||||||||||||| ||||||       ||||| |||||||| ||||||| |||||||||||||||| ||||| ||||||    
T  39890703 attgaagtcaactcaactaatcatttctttaaaaatcgcgcacaactctaaaaagagaattaaaatgagggggagggtattt 39890784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 814 - 891
Target Start/End: Original strand, 39890780 - 39890857
Alignment:
Q  814 tatttgaaacacaaaaatctaggagatttggcaagcacaaaattgtgctattatttcttcaaaattttggggggtgac 891  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39890780 tatttgaaacacaaaaatctgggagatttggcaagcgcaaaattgtgctattatttcttcaaaattttggggggtgac 39890857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 1875666 - 1875604
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  1875666 aattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 1875604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 44761568 - 44761506
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  44761568 aattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 44761506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 390 - 440
Target Start/End: Original strand, 7172968 - 7173018
Alignment:
Q  390 tgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  7172968 tgttttagtaaatgctactaattttatcattgaaatcaacacaattaatca 7173018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 39482655 - 39482719
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| |||||||||||||| |||||||||||| | ||||| ||||| ||||||||||    
T  39482655 ataattaataagggtgttttagtaaattctactaattttacccttgaaatcaacacaattaatca 39482719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 21216175 - 21216113
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  ||||||||||||||| |||||||||| ||||||| ||||| ||||||||||    
T  21216175 aattaataaggatgttttagtaaatgcaactaattttaccattgaaatcaacacaattaatca 21216113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 31082659 - 31082723
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| |||||||||||||| | ||||||||||||||| || ||||  ||||||||||    
T  31082659 ataattaataagggtgttttagtaaataccactaattttatcattaaaatcaagacaattaatca 31082723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 7703232 - 7703170
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||||| || |||||||||||| || |||||||| ||||||| ||||| ||||||||    
T  7703232 ataattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaat 7703170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 41092036 - 41092097
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatc 439  Q
    ||||||||||||| ||||| |||||| || |||||||| ||||||| ||||| |||||||||    
T  41092036 aattaataagagtattttaataaatgatattaattttaccattgaaatcaacacaattaatc 41092097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 11977010 - 11976950
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||| || ||||||||||||||||| ||| || ||||||| ||||| ||||||||    
T  11977010 aattaataagggtattttagtaaatgctactgattataccattgaaatcaacacaattaat 11976950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 9300187 - 9300136
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    |||||||||| |||||||||||||||||| |||||||| |||| || |||||    
T  9300187 aattaataagggtgttttagtaaatgctattaattttaccattaaaatcaac 9300136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 661
Target Start/End: Complemental strand, 18254498 - 18254439
Alignment:
Q  602 gttgttagacagagtgagttcgaattgtgtgtggtgtctgagaaaattagagatggaaga 661  Q
    ||||||||||| |||||  ||||||||||||||||||| | ||||  |||||||||||||    
T  18254498 gttgttagacatagtgacatcgaattgtgtgtggtgtccgtgaaatctagagatggaaga 18254439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 5053227 - 5053165
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||| |||||||||||||| || |||||||| |||  || ||||| ||||||||||    
T  5053227 aattaataagactgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 5053165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 44648594 - 44648544
Alignment:
Q  390 tgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||| ||||||||||| ||||||| |||||| || ||||||    
T  44648594 tgttttagtaaatgatactaattttaccattgaaatcaactaaactaatca 44648544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 45425740 - 45425678
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||| ||||||| |||||| || |||||||| |||| || ||||| ||||||||||    
T  45425740 aattaataagaatgttttaataaatgttattaattttaccattaaaatcaacacaattaatca 45425678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 39405821 - 39405866
Alignment:
Q  395 tagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||||||||||||||||||| | ||| ||||||||||    
T  39405821 tagtaaatgatactaattttatcattgaaattaacacaattaatca 39405866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 895 - 950
Target Start/End: Complemental strand, 39422014 - 39421959
Alignment:
Q  895 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataatacaag 950  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39422014 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataatacaag 39421959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 895 - 946
Target Start/End: Complemental strand, 21007259 - 21007208
Alignment:
Q  895 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataata 946  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21007259 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataata 21007208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 43253936 - 43253874
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  43253936 aattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 43253874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 10366718 - 10366653
Alignment:
Q  375 aataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||| ||||||||||    
T  10366718 aataattaataagagtgttttaataaatgatactaattttaccattgaaatcaacacaattaatca 10366653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 37311992 - 37312054
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  37311992 aattaataagggttttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 37312054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 8679129 - 8679065
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||  | |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  8679129 ataattaataaggatcttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 8679065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 27471375 - 27471439
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||||||||||||| |||||||| | ||||||| |||||  |||||||||    
T  27471375 ataattaataagagtgttttagtaaatgcaactaatttcaccattgaaatcaacataattaatca 27471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 30190733 - 30190671
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  30190733 aattaataagggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatca 30190671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 37695739 - 37695677
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| ||||||| ||||| ||||||||||    
T  37695739 aattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 37695677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 51838029 - 51837970
Alignment:
Q  381 taataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||| || |||||||||||| || |||||||||||||||| ||||| ||||||||||    
T  51838029 taataagggtattttagtaaatgatattaattttatcattgaaatcaacacaattaatca 51837970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 11632123 - 11632185
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||  |||||||||||||| |||||||||||| | ||||| ||||| ||||||||||    
T  11632123 aattaataaaggtgttttagtaaatactactaattttaccgttgaaatcaacacaattaatca 11632185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 14194597 - 14194659
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||| |||| ||| |||||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  14194597 aattcataaaagtattttagtaaatggtactaattttatcattgaaatcaacacaattgatca 14194659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 23004455 - 23004393
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||| || |||||||||||| ||||||| || || ||||||||||    
T  23004455 aattaataagggtgttttagtatatactactaattttaccattgaaatcgacacaattaatca 23004393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 5323012 - 5322948
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| || |||||||||||| || ||||||||||| |||| |||||  |||||||||    
T  5323012 ataattaataagtgtattttagtaaatgatattaattttatcactgaaatcaacataattaatca 5322948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 1778687 - 1778746
Alignment:
Q  381 taataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||  ||||||||||||||  | |||||||||||||||| ||||| ||||||||||    
T  1778687 taataaggatgttttagtaaatgtcattaattttatcattgaaatcaacacaattaatca 1778746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 3901219 - 3901160
Alignment:
Q  381 taataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||| |||||||||||||| || |||||||||||||||| | ||  ||||||||||    
T  3901219 taataagaatgttttagtaaatgatattaattttatcattgaaattaatacaattaatca 3901160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 44301604 - 44301655
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    |||| ||||| || |||||||||||| ||||||||||||||||||| |||||    
T  44301604 aattgataagggtattttagtaaatgatactaattttatcattgaaatcaac 44301655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 11905864 - 11905926
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||| ||||||||||| |||||||||||||||  || | ||| ||||||||||    
T  11905864 aattaataagggtgctttagtaaatgatactaattttatcatcaaaattaacacaattaatca 11905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 12736645 - 12736583
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || || ||||||||| ||||||||||||||||  | ||||| ||||||||||    
T  12736645 aattaataagggtattgtagtaaatgatactaattttatcattagaatcaacacaattaatca 12736583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 19823053 - 19823115
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| |||||||| || |||  || ||||| ||||||||||    
T  19823053 aattaataagggtgttttagtaaatgatactaattctaccatcaaaatcaacacaattaatca 19823115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 24569173 - 24569111
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||  || |||||||| ||||||| ||||| ||||||||||    
T  24569173 aattaataagggtattttagtaaataatattaattttaccattgaaatcaacacaattaatca 24569111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 29024038 - 29023977
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||| |||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  29024038 aattaataaga-tgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 29023977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 34750538 - 34750600
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  |||||||||||||| ||||||||||| |||| || ||||| |||| |||||    
T  34750538 aattaataaggatgttttagtaaatgatactaattttaccattaaaatcaacacaatcaatca 34750600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 3313296 - 3313341
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaa 423  Q
    |||||||||| |||||||||| ||| |||||||||||| |||||||    
T  3313296 aattaataagggtgttttagttaattctactaattttaccattgaa 3313341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 1e-22; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 895 - 950
Target Start/End: Complemental strand, 29942952 - 29942897
Alignment:
Q  895 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataatacaag 950  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29942952 ggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataatacaag 29942897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 28749033 - 28749095
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  28749033 aattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 28749095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 39864153 - 39864215
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  39864153 aattaataagagtattttagtaaatgctactaattttaccattgaaatcaacacaattaatca 39864215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 14757670 - 14757610
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||    
T  14757670 aattaataagagtgttttagtaaatgttactaattttatcgttgaaatcaacacaattaat 14757610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 6160535 - 6160473
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  6160535 aattaataagagtattttagtaaataatactaattttatcattgaaatcaacacaattaatca 6160473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 12039124 - 12039186
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  12039124 aattaataagagtgtattagtaaatgttactaattttaccattgaaatcaacacaattaatca 12039186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 376 - 438
Target Start/End: Complemental strand, 23169071 - 23169009
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  23169071 ataattaataaggatgttttagtaaatgctactaattttaccattgaaatcaacacaattaat 23169009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 9307669 - 9307731
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||| ||||| || |||||||    
T  9307669 aattaacaagggtgttttagtaaatgctattaattttatcattgaaatcaacacagttaatca 9307731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 32970649 - 32970581
Alignment:
Q  372 aacaataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||| |||||||| |||| |||||||||||  || |||||||||||||||| ||||| ||||||||||    
T  32970649 aacaacaattaatacgagtattttagtaaataatattaattttatcattgaaatcaacacaattaatca 32970581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 44707836 - 44707786
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaa 428  Q
    |||||||||  |||||||||||||| |||||||||||||||||||| ||||    
T  44707836 aattaataaatgtgttttagtaaatactactaattttatcattgaaatcaa 44707786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 49224062 - 49224000
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  49224062 aattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 49224000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 7759257 - 7759317
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    ||||||||||||| |||||||||||| || |||||| | ||||||| ||||| ||||||||    
T  7759257 aattaataagagtattttagtaaatgatattaatttcaccattgaaatcaacacaattaat 7759317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 12151232 - 12151278
Alignment:
Q  392 ttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||||| ||||||||||||||||||| |||||  |||||||    
T  12151232 ttttagtaaatgatactaattttatcattgaaatcaacataattaat 12151278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 15699164 - 15699226
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| |||  || ||||| ||||||||||    
T  15699164 aattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 15699226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 31042839 - 31042901
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || ||  |||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  31042839 aattaataagggtattacagtaaatgatactaattttaccattgaaatcaacacaattaatca 31042901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 36701963 - 36702025
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |  |||||||||||| ||||||||||| ||||||| |||||  |||||||||    
T  36701963 aattaataagggcattttagtaaatgatactaattttaccattgaaatcaacataattaatca 36702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 36718067 - 36718129
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |  |||||||||||| ||||||||||| ||||||| |||||  |||||||||    
T  36718067 aattaataagggcattttagtaaatgatactaattttaccattgaaatcaacataattaatca 36718129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 40144923 - 40144861
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| |||  || ||||| ||||||||||    
T  40144923 aattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 40144861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 17988636 - 17988572
Alignment:
Q  378 aattaataagagtgttttagtaaatgcta--ctaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||  ||  ||||||||| ||||||| ||||| ||||||||||    
T  17988636 aattaataagagtattttagtaaataatatactaattttaacattgaaatcaacacaattaatca 17988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 37643346 - 37643273
Alignment:
Q  251 tctcattttaattttcactttaacatttcttttatatttaaaaataattgtcactttaaaatactaatataaca 324  Q
    ||||||||||||| | |||||||||||| |||| | | | ||| ||||||||| ||||||||| |||| |||||    
T  37643346 tctcattttaattgttactttaacattttttttctgtctcaaattaattgtcagtttaaaatattaatgtaaca 37643273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 40530295 - 40530233
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  40530295 aattaataagggtgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 40530233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 378 - 438
Target Start/End: Original strand, 4818593 - 4818653
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||| |||||||||||||||||||||||||||  |||||| ||||| ||||||||    
T  4818593 aattaataagggtgttttagtaaatgctactaattttacaattgaaatcaacacaattaat 4818653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 436
Target Start/End: Complemental strand, 2232144 - 2232086
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaatta 436  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||||    
T  2232144 aattaataagagttttttaataaatgctactaattttaccattgaaatcaacacaatta 2232086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 8725080 - 8725018
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| ||||||| ||||| ||||||||||    
T  8725080 aattaataagtgtgttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 8725018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 9515789 - 9515850
Alignment:
Q  379 attaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||  |||||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  9515789 attaataaggatgttttagtaaatgatactaattttaccattgaaatcaacacaattaatca 9515850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 6615951 - 6615891
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    ||||||||||  |||||| ||||||||||||||||||| ||||||| ||||| ||||||||    
T  6615951 aattaataaggatgttttggtaaatgctactaattttaccattgaaatcaacacaattaat 6615891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 27542837 - 27542899
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||| || |||||||| ||||||| ||||| |||| |||||    
T  27542837 aattaataagagtattttagtaaatggtattaattttaccattgaaatcaacacaatcaatca 27542899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 27580642 - 27580704
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||| || |||||||| ||||||| ||||| ||||||||||    
T  27580642 aattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaattaatca 27580704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 29374384 - 29374446
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||  || ||||||||||||||| |||||||||||||||| |||||  |||||||||    
T  29374384 aattaataaaggtcttttagtaaatgctattaattttatcattgaaatcaacataattaatca 29374446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 32440183 - 32440245
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||| || |||||||||||||||| | ||| ||||||||||    
T  32440183 aattaataagggtattttagtaaatgatattaattttatcattgaaattaacacaattaatca 32440245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 41062231 - 41062190
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcat 419  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  41062231 aattaataagggtgttttagtaaatgatactaattttatcat 41062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 7827997 - 7827937
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||| || ||||| |||||| ||||||||||| ||||||| ||||| ||||||||    
T  7827997 aattaataagggtattttaataaatgatactaattttaccattgaaatcaacacaattaat 7827937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 37184136 - 37184088
Alignment:
Q  392 ttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| || |||||||| ||||||| ||||||||||||||||    
T  37184136 ttttagtaaatgatattaattttaccattgaaatcaactcaattaatca 37184088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 6315848 - 6315786
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||| || |||||||||||||||| | ||| |||| |||||    
T  6315848 aattaataagggtattttagtaaatgatattaattttatcattgaaattaacacaatcaatca 6315786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 11904252 - 11904310
Alignment:
Q  382 aataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| |||||||||||| || ||||||||| |||||| ||||  ||||||||||    
T  11904252 aataagagtattttagtaaatgatattaattttattattgaactcaatacaattaatca 11904310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 15439390 - 15439328
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||| |||||||||||| ||||||||||| ||||||| | ||  ||||||||||    
T  15439390 aattaataaaagtattttagtaaatgatactaattttaccattgaaattaatacaattaatca 15439328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 15818553 - 15818492
Alignment:
Q  378 aattaataagagtgttttagtaaat--gctactaattttatcattgaagtcaactcaattaa 437  Q
    |||||||||  ||||||||||||||  ||||||||||||| ||||||| ||||| |||||||    
T  15818553 aattaataaaggtgttttagtaaatatgctactaattttaccattgaaatcaacacaattaa 15818492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 40899960 - 40900022
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| ||||||||||  |||  || ||||| ||||||||||    
T  40899960 aattaataagggtgttttagtaaatgatactaattttgccatcaaaatcaacacaattaatca 40900022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 2557538 - 2557465
Alignment:
Q  251 tctcattttaattttcactttaacatttcttttatatttaaaaataattgtcactttaaaatactaatataaca 324  Q
    ||||||||||| | | |||||||||||| ||  |||| | ||||||||||||| ||||||||| | ||||||||    
T  2557538 tctcattttaactgttactttaacattttttcaatatcttaaaataattgtcattttaaaatattgatataaca 2557465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Complemental strand, 6753729 - 6753684
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaa 423  Q
    |||||||||| || |||||||||||| ||||||||||| |||||||    
T  6753729 aattaataagggtattttagtaaatgatactaattttaccattgaa 6753684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 29856089 - 29856146
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaatt 435  Q
    ||||||||||||| |||||| || || || |||||||||||||||| ||||| |||||    
T  29856089 aattaataagagtattttagcaagtgatattaattttatcattgaaatcaacgcaatt 29856146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 34360697 - 34360759
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||    
T  34360697 aattaataagagtgttttagtaaatgctactaattttaccattgaaatcaatacaattaatca 34360759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 46396962 - 46396900
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||| ||||| ||||||||||    
T  46396962 aattaataagagtgttttagtaaatgctattaattttaccattgaaatcaacacaattaatca 46396900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 47464444 - 47464382
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  47464444 aattaataagagttttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 47464382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 2942723 - 2942662
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  2942723 aattaataag-gtgttttagtaaatgctactaattttatcatcgaaatcaacacaattaatca 2942662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 25734844 - 25734770
Alignment:
Q  250 gtctcattttaattttcactttaacatttcttttatatttaaaaataattgtcactttaaaatactaatataaca 324  Q
    |||||||||||||| |||||||| |||||||| | ||| | ||||||||||||||||||||||||| ||| ||||    
T  25734844 gtctcattttaattatcactttatcatttcttctctatcttaaaataattgtcactttaaaatactgatacaaca 25734770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 32884843 - 32884905
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||| ||||| ||||||||||    
T  32884843 aattaataagagtgttttactaaatgctactaattctaccattgaaatcaacacaattaatca 32884905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 6643727 - 6643677
Alignment:
Q  390 tgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  6643727 tgttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 6643677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 40122929 - 40122871
Alignment:
Q  382 aataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||| ||||||||||||||||||||||||||| |||| || ||||| ||||||||||    
T  40122929 aataagggtgttttagtaaatgctactaattttaacattaaaatcaacgcaattaatca 40122871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 3689602 - 3689666
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||||| ||||||||||| |||  || ||||  ||||||||||    
T  3689602 ataattaataagagtgttttagtaaatgatactaattttaccatcaaaatcaatacaattaatca 3689666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 16821412 - 16821348
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||  | || ||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  16821412 ataattaataaggatattatagtaaatgatactaattttatcattgaaatcaacacaattaatca 16821348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 423
Target Start/End: Complemental strand, 38663525 - 38663481
Alignment:
Q  379 attaataagagtgttttagtaaatgctactaattttatcattgaa 423  Q
    |||||||| |||||||||||||||||||||||||||| |||||||    
T  38663525 attaataaaagtgttttagtaaatgctactaattttaccattgaa 38663481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 51625135 - 51625187
Alignment:
Q  388 agtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  51625135 agtgttttagtaaatgttactaattttaccattgaaatcaacacaattaatca 51625187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 2653462 - 2653524
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| ||||| |||||| |||||||||||  |||||| ||||| ||||||||||    
T  2653462 aattaataagagtattttaataaatgatactaattttacaattgaaatcaacacaattaatca 2653524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 11907678 - 11907616
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  11907678 aattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 11907616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 17114482 - 17114544
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  17114482 aattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 17114544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 36985828 - 36985890
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||| | || |||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  36985828 aattaatacgggtattttagtaaatgatactaattttaccattgaaatcaacacaattaatca 36985890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 392 - 438
Target Start/End: Original strand, 49747017 - 49747063
Alignment:
Q  392 ttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  49747017 ttttagtaaatactactaattttatcattgaaatcaacacaattaat 49747063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 2158075 - 2158018
Alignment:
Q  382 aataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatc 439  Q
    ||||| ||||||||  |||||| ||||||||||||||||||| |||| ||||||||||    
T  2158075 aataaaagtgttttcttaaatgatactaattttatcattgaaatcaattcaattaatc 2158018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 53346801 - 53346846
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaa 423  Q
    |||||||||| |||||||||||||||||| |||||||| |||||||    
T  53346801 aattaataagggtgttttagtaaatgctattaattttaccattgaa 53346846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 17237375 - 17237315
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    ||||||||||  |||||||||||||| ||||||||||| ||||| | ||||| ||||||||    
T  17237375 aattaataaggttgttttagtaaatgttactaattttaccattgcaatcaacacaattaat 17237315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 32470025 - 32469965
Alignment:
Q  380 ttaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||||||| |||||| ||||||||||| |||| || ||||| ||||||||||    
T  32470025 ttaataagaatgttttaataaatgatactaattttaccattaaaatcaacacaattaatca 32469965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 42517719 - 42517655
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| || |||||||||||| |  |||||||| ||||||| ||||| ||||||||||    
T  42517719 ataattaataagggtattttagtaaatgatcttaattttaccattgaaatcaacacaattaatca 42517655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 47773098 - 47773038
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||| ||||||||||||||| ||||||||||| |||  || ||||| ||||||||    
T  47773098 aattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaat 47773038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 12567392 - 12567330
Alignment:
Q  240 cactttctcggtctcattttaattttcactttaacatttcttttatatttaaaaataattgtca 303  Q
    ||||||||| |||| ||||||||| |||||||||||||| || | ||||| |||||||||||||    
T  12567392 cactttctctgtctaattttaattgtcactttaacattt-ttctctatttcaaaataattgtca 12567330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 26147694 - 26147635
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaa 437  Q
    ||||||||||| |||||||||||||| ||||||||||| |||  || ||||| |||||||    
T  26147694 aattaataagaatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaa 26147635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 4972602 - 4972664
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||||||||||  || ||||||   |||||| ||||| ||||||||||    
T  4972602 aattaataagagtgttttagtaaatgtcaccaatttttcaattgaaatcaacacaattaatca 4972664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 28500970 - 28500908
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||||||||| || |||||||| ||||||| ||||| |||| |||||    
T  28500970 aattaataagggtattttagtaaatgatattaattttaccattgaaatcaacacaatcaatca 28500908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 35311302 - 35311240
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||| |||||||||| | |||||||| ||||||| | |||  |||||||||    
T  35311302 aattaataagagtgttctagtaaatgcaattaattttaccattgaaattaacataattaatca 35311240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 440
Target Start/End: Complemental strand, 35380400 - 35380350
Alignment:
Q  390 tgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||| |||| || |||||  |||||||||    
T  35380400 tgttttagtaaatgctactaattttaccattaaaatcaacataattaatca 35380350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 49176013 - 49175951
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  | |||||||||||| ||||||||||||||||||| ||  | ||||||||||    
T  49176013 aattaataaggttattttagtaaatgatactaattttatcattgaaatctccacaattaatca 49175951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 52859878 - 52859816
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  |||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  52859878 aattaataaggatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 52859816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Complemental strand, 7061726 - 7061681
Alignment:
Q  395 tagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  7061726 tagtaaatgatactaattttaccattgaaatcaacacaattaatca 7061681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 429
Target Start/End: Original strand, 7987010 - 7987067
Alignment:
Q  372 aacaataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    ||||||||||||||| | | |||||||| ||| |||||||||||||||| || |||||    
T  7987010 aacaataattaataataatattttagtagatgatactaattttatcattaaaatcaac 7987067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 50264159 - 50264102
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaatt 435  Q
    ||||||||||||| |||||||||||| |  |||||||| ||||||| ||||| |||||    
T  50264159 aattaataagagtattttagtaaatgatgttaattttaacattgaaatcaacacaatt 50264102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 372 - 440
Target Start/End: Original strand, 33819257 - 33819325
Alignment:
Q  372 aacaataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  33819257 aacaacaattaataagagtgattttgtaaatgctactaattttaccattgaaatcaacacaattaatca 33819325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 29835494 - 29835432
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||||  |||||||||    
T  29835494 aattaataagagtgttttagtaaatgctactaattttaccatttaaatcaacataattaatca 29835432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 41506145 - 41506083
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||||||||||||||||||||||| |||| || | ||| ||||||||||    
T  41506145 aattaataagagtgttttagtaaatgctactaattttaccattaaaattaacacaattaatca 41506083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 5524427 - 5524491
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||||||| ||||| ||||||||||    
T  5524427 ataattaataaaagtgttttattaaatgttactaattttaccattgaaatcaacacaattaatca 5524491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 378 - 437
Target Start/End: Complemental strand, 11373508 - 11373449
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaa 437  Q
    |||||||||| ||||||||||||||||||||||||||| ||| ||| ||||| |||||||    
T  11373508 aattaataagggtgttttagtaaatgctactaattttaccatcgaaatcaacacaattaa 11373449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 23670536 - 23670595
Alignment:
Q  379 attaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||    
T  23670536 attaataagagtgttttagtaaatgctattaattttaccatggaaatcaacacaattaat 23670595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 7463262 - 7463324
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||| || || ||| |||||||||||||||||||||||||||| ||||| ||||||||||    
T  7463262 aattaatgagggtatttaagtaaatgctactaattttatcattgaaatcaacacaattaatca 7463324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 894 - 944
Target Start/End: Original strand, 19827619 - 19827669
Alignment:
Q  894 tggacggatccagaaattttgaatagtgggggcatgataaaaaatgtataa 944  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||||||    
T  19827619 tggacggatccaaaaattttgaatagtgggggcatgaccaaaaatgtataa 19827669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 34947549 - 34947611
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| ||||||| ||||| ||||||||||    
T  34947549 aattaataagggtgttttagtaaatgataataattttaccattgaaatcaacacaattaatca 34947611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 37245739 - 37245799
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatc 439  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| |||||  ||||||||    
T  37245739 aattaataagagtgttttagtaaatgctactaa-tttaccattgaaatcaacagaattaatc 37245799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 83434 - 83496
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||| |||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  83434 aattaataagaatgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 83496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 24516369 - 24516307
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  | |||||||||||| ||||||||||| ||||||| ||||| ||||||||||    
T  24516369 aattaataaggtttttttagtaaatgttactaattttaccattgaaatcaacacaattaatca 24516307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 27921037 - 27921099
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||| |||||| ||||||||||| |||| || |||||  |||||||||    
T  27921037 aattaataagagtgttttaataaatgatactaattttaccattaaaatcaacataattaatca 27921099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 38391797 - 38391859
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||| ||||||||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  38391797 aattaacaagagtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 38391859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 47045533 - 47045472
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || |||||| ||||| ||||||||||| ||||||| ||||||||||||||||    
T  47045533 aattaataagggtattttaggaaatgatactaatttta-cattgaaatcaactcaattaatca 47045472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 21350705 - 21350645
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||| |||||||||||||| | |||| ||||| ||||||| ||||| ||||||||    
T  21350705 aattaataagggtgttttagtaaatacaactatttttaccattgaaatcaacacaattaat 21350645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 30866014 - 30866078
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||| |||||||||||| || ||||| || ||||||| | ||| ||||||||||    
T  30866014 ataattaataagagtattttagtaaatgatattaattataccattgaaattaacacaattaatca 30866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 34100613 - 34100565
Alignment:
Q  392 ttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||||||||  |||||| ||||| ||||||||||    
T  34100613 ttttagtaaatgctactaattttactattgaaatcaacacaattaatca 34100565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 403
Target Start/End: Original strand, 47254951 - 47254990
Alignment:
Q  364 actctatgaacaataattaataagagtgttttagtaaatg 403  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  47254951 actctattaactataattaataagagtgttttagtaaatg 47254990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 21937867 - 21937825
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcatt 420  Q
    |||||||||||||| |||||||||||  |||||||||||||||    
T  21937867 aattaataagagtgctttagtaaatgacactaattttatcatt 21937825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 376 - 434
Target Start/End: Complemental strand, 32346134 - 32346076
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaat 434  Q
    ||||||||||||||| |||||||| ||| || |||||||| ||||||| ||||| ||||    
T  32346134 ataattaataagagtattttagtagatgatattaattttaccattgaaatcaacacaat 32346076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 40076364 - 40076426
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| |||||||||||||||| ||||||||||| |||  || | ||| ||||||||||    
T  40076364 aattaataatagtgttttagtaaatgatactaattttaccatcaaaattaacacaattaatca 40076426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 42935710 - 42935772
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| |||  || ||||| ||||||||||    
T  42935710 aattaataagggtgttttagtaaatgatattaattttaccatcaaaatcaacacaattaatca 42935772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 31327480 - 31327533
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    ||||||||||||||||||| |||||||| |||  ||||||||||| || |||||    
T  31327480 ataattaataagagtgtttcagtaaatgatacatattttatcattaaaatcaac 31327533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 33775982 - 33776039
Alignment:
Q  267 actttaacatttcttttatatttaaaaataattgtcactttaaaatactaatataaca 324  Q
    ||||||||||||||||| ||| | ||||||||| |||||||| ||||| ||| |||||    
T  33775982 actttaacatttcttttctatcttaaaataattatcactttataatacaaatgtaaca 33776039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 16140 - 16202
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||||| ||||||||||||| || ||||| ||||||||||    
T  16140 aattaataagtgtgttttagtaaatgctattaattttatcattaaaatcaacacaattaatca 16202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 39329735 - 39329685
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaa 428  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39329735 aattaataagagtgttttagtaaatgctattaattttatcattgaaatcaa 39329685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 39691532 - 39691594
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||| |||||||||||| || |||||||||||||||| ||||| ||||||||||    
T  39691532 aattaataagagtattttagtaaatgatattaattttatcattgaaatcaacacaattaatca 39691594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 43115869 - 43115811
Alignment:
Q  382 aataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  43115869 aataagagtattttagtaaatgctactaactttatcattgaaatcaacacaattaatca 43115811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 8947125 - 8947061
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  8947125 ataattaataaggatgttttagtaaatattactaattttatcattgaaatcaacacaattaatca 8947061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 5789719 - 5789657
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||| ||||||||||  |||||| ||||  ||||||||||    
T  5789719 aattaataagggtgttttagtaaatgccactaattttactattgaattcaatacaattaatca 5789657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 15359158 - 15359096
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || ||||||||||||  || ||||| ||||||||||    
T  15359158 aattaataagggtgttttagtaaatgatattaattttatcatcaaaatcaacacaattaatca 15359096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 16463731 - 16463793
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| ||||||||||| |||  || ||||| ||||||||||    
T  16463731 aattaataagggtgttttagtaaatgatactaattttaccatcaaaatcaacacaattaatca 16463793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 45235623 - 45235685
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||| || |||||||| ||||||| ||||| |||| |||||    
T  45235623 aattaataagggtgttttagtaaatgatattaattttaccattgaaatcaacacaatcaatca 45235685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 35313929 - 35313991
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  || |||| ||||| |||||||||||| ||||||| ||||| ||||||||||    
T  35313929 aattaataaggttgctttaataaatactactaattttaccattgaaatcaacacaattaatca 35313991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 41221017 - 41220955
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| | | ||||| |||||| |||||||||||| |||||| ||||| ||||||||||    
T  41221017 aattaataaaaatattttaataaatgatactaattttataattgaaatcaacacaattaatca 41220955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 17075 - 17139
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||| ||||| || |||||||||||||||||| ||||||| ||||| ||||||||||    
T  17075 ataattaataagggtgttctaataaatgctactaattttaccattgaaatcaacacaattaatca 17139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 1781844 - 1781906
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||  |||||  |||||||||    
T  1781844 aattaataagggtgttttagtaaatgctactaattttaccattgagatcaacataattaatca 1781906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 3720313 - 3720251
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||||||||||| |||||| |||| |||||||| |||||| ||||| ||||||||||    
T  3720313 aattaataagagtgtttttgtaaatactacaaattttataattgaaatcaacacaattaatca 3720251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 23142709 - 23142771
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||| |||| ||||| ||||||| ||||| ||||||||||    
T  23142709 aattaataagggtgttttagtaaatgccactatttttaccattgaaatcaacacaattaatca 23142771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 24983521 - 24983459
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||  |||||||||| ||||||| ||||||||| ||||||    
T  24983521 aattaataagggtgttttagtaaatgacactaattttaccattgaaatcaactcaactaatca 24983459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 31894269 - 31894220
Alignment:
Q  391 gttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  31894269 gttttagtaaatgctactaattttaccattgaaatcaacacaattaatca 31894220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 13087570 - 13087634
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||||  |||||||||||||| || |||||||| ||||||| ||||| ||||||||||    
T  13087570 ataattaataaggatgttttagtaaatgatattaattttaccattgaaatcaacacaattaatca 13087634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 386 - 440
Target Start/End: Complemental strand, 1063667 - 1063613
Alignment:
Q  386 agagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||| |||||||||||  ||||||||||||||||||| ||||| ||||||||||    
T  1063667 agagtattttagtaaataatactaattttatcattgaaatcaacacaattaatca 1063613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 8115110 - 8115068
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcatt 420  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  8115110 aattaataagagtattttagtaaatgatactaattttatcatt 8115068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 250 - 324
Target Start/End: Complemental strand, 12307812 - 12307738
Alignment:
Q  250 gtctcattttaattttcactttaacatttcttttatatttaaaaataattgtcactttaaaatactaatataaca 324  Q
    |||||||||||||| |||||||||||    |||||| | | ||||||||||||||||||||||| ||||| ||||    
T  12307812 gtctcattttaattgtcactttaacaacgtttttatgtctcaaaataattgtcactttaaaatattaatacaaca 12307738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 15058159 - 15058221
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || ||||||||||||| |||||||||| ||||||| | |||| |||||||||    
T  15058159 aattaataagggtattttagtaaatgccactaattttaccattgaaattaacttaattaatca 15058221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 1956051 - 1955990
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatc 439  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||| ||||  |||||||||    
T  1956051 aattaataagagtatattagtaaatgatactaattttaccattgaaatcaatacaattaatc 1955990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 376 - 439
Target Start/End: Complemental strand, 11143661 - 11143597
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac-tcaattaatc 439  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||  || ||||| ||||||||||    
T  11143661 ataattaataagggtgatttagtaaatgatactaattttatcatcaaaatcaacatcaattaatc 11143597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 27823208 - 27823271
Alignment:
Q  250 gtctcattttaattttcactttaacatttcttttatatttaaaaataattgtcactttaaaata 313  Q
    |||||||||||||| ||| |||||  |||||||| ||| | |||||||||||| ||||||||||    
T  27823208 gtctcattttaattgtcagtttaatttttcttttctatctcaaaataattgtcgctttaaaata 27823271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 11656018 - 11655956
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||  |||||||||| |||  || ||||| ||||||||||    
T  11656018 aattaataagggtgttttagtaaatgacactaattttaccatcaaaatcaacacaattaatca 11655956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 13909466 - 13909528
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| || ||||||||||||  |||||||||| ||||||| ||||| || |||||||    
T  13909466 aattaataagggtattttagtaaatgtcactaattttaccattgaaatcaacacatttaatca 13909528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 32440717 - 32440655
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||||  ||||||||||| |||  || ||||| ||||||||||    
T  32440717 aattaataagggtgttttagtaaataatactaattttaccatcaaaatcaacacaattaatca 32440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 8695087 - 8695124
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaatttta 415  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  8695087 aattaataagaatgttttagtaaatgctattaatttta 8695124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 429
Target Start/End: Complemental strand, 28101417 - 28101380
Alignment:
Q  392 ttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  28101417 ttttagtaaatgatactaattttatcattgaaatcaac 28101380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 136112 - 136059
Alignment:
Q  376 ataattaataagagtgttttagtaaatgctactaattttatcattgaagtcaac 429  Q
    |||||||||||| |||||||||||||||||| |||||||| ||||||| |||||    
T  136112 ataattaataagggtgttttagtaaatgctattaattttaccattgaaatcaac 136059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 2067 - 2129
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||||  |||||||||||||| || |||||||||||||||| | ||| ||||||||||    
T  2067 aattaataaggatgttttagtaaatgatattaattttatcattgaaattaacacaattaatca 2129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Complemental strand, 34092 - 34030
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| |||||||||||||||| ||||||||||  |||||| ||||  ||||||||||    
T  34092 aattaataagggtgttttagtaaatgccactaattttactattgaattcaatacaattaatca 34030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 378 - 440
Target Start/End: Original strand, 105726 - 105788
Alignment:
Q  378 aattaataagagtgttttagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    |||||||||| ||||||||||||| |||| |||||||| ||||||| | ||| ||||||||||    
T  105726 aattaataagggtgttttagtaaacgctattaattttaccattgaaataaacacaattaatca 105788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 438
Target Start/End: Complemental strand, 746 - 697
Alignment:
Q  389 gtgttttagtaaatgctactaattttatcattgaagtcaactcaattaat 438  Q
    |||||||||||||||||| |||||||| ||||||| ||||| ||||||||    
T  746 gtgttttagtaaatgctattaattttaccattgaaatcaacacaattaat 697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 440
Target Start/End: Original strand, 50263 - 50308
Alignment:
Q  395 tagtaaatgctactaattttatcattgaagtcaactcaattaatca 440  Q
    ||||||||| ||||||||||||||||||| | ||| ||||||||||    
T  50263 tagtaaatgatactaattttatcattgaaattaacacaattaatca 50308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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