View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_11 (Length: 425)
Name: NF18586_low_11
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 52630630 - 52630217
Alignment:
| Q |
1 |
ctgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttgagct |
100 |
Q |
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| T |
52630630 |
ctgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttcaatcacggtcctcaaatctccaatgtttttgagct |
52630531 |
T |
|
| Q |
101 |
agatgtagttacaggtacttaataataagttaattgcttgctacttaattaatcattgctataaaatgcattcttcattctcccactgtcctagtactgt |
200 |
Q |
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| T |
52630530 |
agatgtagttacaggtatttaataataagttaattgcttgctacttaattaatcactactataaaatgcattcttcattctcccactgtcctagtactgt |
52630431 |
T |
|
| Q |
201 |
tctcaaattggtatgtcatggtgtgtgtacttgtgtattaatataggaaagggtgaggtgttgacgcgttcagaagatcgtaattcagacttgttccatt |
300 |
Q |
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| T |
52630430 |
tctcaaattggtatgtcatggtatgtgtacttgtgtattaatataggaaagggtgaggtgttgacgtgttcagaagatcgtaattcagacttgttccatt |
52630331 |
T |
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| Q |
301 |
ctgttcttggtggtcttggacaatttggaatcatcgcaagagctagaattgctcttcaaccagctccacaaagagtatgtgcatatctttccttctctct |
400 |
Q |
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| T |
52630330 |
ctgttcttggtggtcttggacaatttggaatcatcacaagagctagaattgctcttcaaccagctccacaaagagtatgtgcatatctttccttctctct |
52630231 |
T |
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| Q |
401 |
cttacgtacttcat |
414 |
Q |
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| T |
52630230 |
cttacgtacttcat |
52630217 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 52454634 - 52454570
Alignment:
| Q |
1 |
ctgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaaccttc |
65 |
Q |
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| T |
52454634 |
ctgattatttgtatttatcggttggtggaactctctctaatgctggtattagtggacaaaccttc |
52454570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17243444 - 17243504
Alignment:
| Q |
1 |
ctgattacttgtatttgtctgtgggtggtactctatctaatggtggtattagtggccaaac |
61 |
Q |
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| T |
17243444 |
ctgattacttgtatttgtctgttggtggcactctctctaatgctggaattgggggccaaac |
17243504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 35830413 - 35830475
Alignment:
| Q |
302 |
tgttcttggtggtcttggacaatttggaatcatcgcaagagctagaattgctcttcaaccagc |
364 |
Q |
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| T |
35830413 |
tgttcttggagggcttggtcaatttggcatcatcactagagctagaatttctcttgaaccagc |
35830475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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