View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_12 (Length: 419)
Name: NF18586_low_12
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 51143775 - 51144166
Alignment:
| Q |
19 |
caatcaagattcagacaagagcaaggacaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattg |
118 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51143775 |
caatcaagattcagagaagagcaaggacaaagatgtaaccaccaaaacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattg |
51143874 |
T |
|
| Q |
119 |
atgcttatggggactttgggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51143875 |
atgcttatggggactttgggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaa |
51143974 |
T |
|
| Q |
219 |
actcaaaagttgttgatgaagtctctgaggtaatttactcactgatctcatgtaattggtgaaggttgtttctcctgg-gtaccctacatggcttactac |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||| ||||||||||||||||||||| |
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| T |
51143975 |
actcaaaagttgttgatgaagtctctgaggtaatttactcactgatcttatgtaattggtgaatgttatttcttctggtgtaccctacatggcttactac |
51144074 |
T |
|
| Q |
318 |
aactttgaatcaaacatttagaaatttgctaacgacgatttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttg |
409 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51144075 |
aactttgaatcaaacatttagaaatttgataacgacgacttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttg |
51144166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 409
Target Start/End: Original strand, 51154923 - 51155310
Alignment:
| Q |
23 |
caagattcagacaagagcaaggacaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgc |
122 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51154923 |
caagattcagacaagagcaaggacaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgc |
51155022 |
T |
|
| Q |
123 |
ttatggggactttgggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactc |
222 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51155023 |
ttatggggactgtaggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactc |
51155122 |
T |
|
| Q |
223 |
aaaagttgttgatgaagtctctgaggtaatttactcactgatctcatgtaattggtgaaggttgtttctcctgg-gtaccctacatggcttactacaact |
321 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||| |
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| T |
51155123 |
aaaagttgttgatgaagtctctgaggtaatttactcactgatctcatgtaattggtgaatgttatttcttctggtgtaccctacatggcttactacaact |
51155222 |
T |
|
| Q |
322 |
ttgaatcaaacatttagaaatttgctaacgacgatttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttg |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51155223 |
ttgaatcaaacatttagaaattttctaacgatgacttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttg |
51155310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 29939279 - 29939020
Alignment:
| Q |
23 |
caagattcagacaagagcaaggacaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgc |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
29939279 |
caagattcagagaagagcaaggacaaagatgaaatcaccaacacagtatccttatacaagcttttctcatttgctgatcctttggattgtttattgatgc |
29939180 |
T |
|
| Q |
123 |
ttatggggactttgggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttggagattccacaaactc |
222 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| || |
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|
| T |
29939179 |
ttatggggactgtaggtgctattgggaatggaatctctttacccttgatggttttaatatttggaactatgatcaatgcattcggagaatccacaacgtc |
29939080 |
T |
|
| Q |
223 |
aaaagttgttgatgaagtctctgaggtaatttactcactgatctcatgtaattggtgaag |
282 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || ||| |||||||||| ||||||||| |
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|
| T |
29939079 |
aaaagttgttgatgaagtctccaaggtaattttctaactaatctcatgtatttggtgaag |
29939020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 51197179 - 51197363
Alignment:
| Q |
23 |
caagattcagacaagagcaaggacaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgc |
122 |
Q |
| |
|
||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
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|
| T |
51197179 |
caagattcagaaaagaaaaaggctaaagatgaaaccaccaatacagtacccttatacaagcttttctcatttgctgattctttggatcatttattgatgt |
51197278 |
T |
|
| Q |
123 |
ttatggggactttgggtgctattgggaatggactctctatacccttgatgattttaatatttggaactatgatcaatgcatttgg |
207 |
Q |
| |
|
|| | |||||| | |||||||||||||||||| |||| || |||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
51197279 |
ttgttgggactgttggtgctattgggaatggaatctcaatgcccttgatgactttaatatttggaaatatgatcaatgcatttgg |
51197363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 29938866 - 29938773
Alignment:
| Q |
316 |
acaactttgaatcaaacatttagaaatttgctaacgacgatttactgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctttg |
409 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||| ||||| |
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|
| T |
29938866 |
acaactttaaatcaaacatttaaaaatttactaacgacgacttactgtggtcaggtgtctctgaaatttgtatacctggcggcgggtagctttg |
29938773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Original strand, 51197777 - 51197823
Alignment:
| Q |
361 |
tgtgatcaggtgtctctgaaatttgtatacttggctgcgggtacctt |
407 |
Q |
| |
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|||| ||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
51197777 |
tgtgttcaggtgtccttgaaattcgtatacttggctgcgggtacctt |
51197823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Complemental strand, 49739190 - 49739093
Alignment:
| Q |
65 |
acagtacccttatacaagcttttctcatttgctgatccttcggatcgtttattgatgcttatggggactttgggtgctattgggaatggactctctat |
162 |
Q |
| |
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||||||||||| |||||||||||||||||||| || ||| |||| |||||||||| || | |||||| | |||||| ||||||||||| ||||||| |
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| T |
49739190 |
acagtacccttttacaagcttttctcatttgcagactcttgggattatttattgatgtttgttgggactatcggtgctgttgggaatggagtctctat |
49739093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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