View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_2 (Length: 774)
Name: NF18586_low_2
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_2 |
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| [»] scaffold0907 (2 HSPs) |
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Alignment Details
Target: scaffold0907 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 365 - 729
Target Start/End: Complemental strand, 2425 - 2062
Alignment:
| Q |
365 |
aagaatccagttggattgacttagtggtgtaaatttgagatattgaagaacgctcctctcaaaatctcagtttaaacgctcctgaggcaaatttttgtaa |
464 |
Q |
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| T |
2425 |
aagaatccagttggattgacttagtggcataagtttgagatattgaagaacgctcttctcaaaatcttagtttaaacgctcctggggcagatttttataa |
2326 |
T |
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| Q |
465 |
actagtttataatgagtttttactcgtaactttaaatgatttatcgctaatggatggtgggattcgtgtcccattctctccgattaatcggccattgaac |
564 |
Q |
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| T |
2325 |
attagtttataataagtttttactcttaactttaaatgacttatcgctaatggacggtgggattagtgtcccattctctccgattaatcggccattaaac |
2226 |
T |
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| Q |
565 |
tggataccaagttttttaaaacaaaatcacataaaaactgtatttagcaagacttatgattatattttatcatcttcacacgtcatatttcactgagcag |
664 |
Q |
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| T |
2225 |
tagataccacgttttttaaaacaaaatcacataaaaactgtatttagcaagacttatgtttatattttatcatcttcacacgtcatatttcactgagcag |
2126 |
T |
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| Q |
665 |
acataaaatagtgaaaaatatttcaagtgttagtgtaacaactatcatacacactcactcacaca |
729 |
Q |
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| T |
2125 |
acataacatagtgaaaaatatttcaagtgttagtataacaa-taacaaacacactcactcacaca |
2062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0907; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 2690 - 2422
Alignment:
| Q |
24 |
ccgacgatgagtatgatagaatcacggtgtgttatccaaagtccggtaaaaattatattttgaagttggtctaaatatatgcgaagttgctaactttgtt |
123 |
Q |
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| T |
2690 |
ccgacgatgagtatgatagaatcatggtgtgttgtccaaagttcggcaaaaatagtattttaaagtcggtctaaatatatgcgaagttgctaactttgtt |
2591 |
T |
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| Q |
124 |
gtagtattatgtttaaatcgacgatgaatttgataaaattaagttgtgttgtgtcgtaagtttgttaaatactgtattttgaagcttcaataagattata |
223 |
Q |
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| T |
2590 |
gtagtattatgtttaaattgacgatgaatttgataaaattaggtt-tgttgtgtcgtaagtttgttaaatactgtattttgaagcttcaacacgattata |
2492 |
T |
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| Q |
224 |
gtgtcaatgtgatttatcaaactcactatgaatttatatgtactaagatgctgactttgttgtactaaga |
293 |
Q |
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| T |
2491 |
gtgtcaatgtgatttatcgaactaactatgaatttatatgtactaagatgttgactttgttgtactaaga |
2422 |
T |
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