View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_22 (Length: 316)
Name: NF18586_low_22
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 46599939 - 46599774
Alignment:
| Q |
65 |
caaacctggatcagagtgtgccagccagaaaggttggttgctctaataaacacacacgcatatcaaatcgcatctaatctattctacagagtcattgtat |
164 |
Q |
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| T |
46599939 |
caaacctggatcagagtgtgccagccagaaaggttggttgctctaataaacacacacgcatatcaaatcgcatctaa-----tctacagagtcattgtat |
46599845 |
T |
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| Q |
165 |
ttagttttagttagaccctcccacacccaccaactatacaaaagcctagtttcctggaaagtaccctccccc |
236 |
Q |
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| T |
46599844 |
ttagtttaagttagaccct-ccacacccaccaactatacaaaagcctagtttcctggaaagtaccctccccc |
46599774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 266
Target Start/End: Complemental strand, 46599755 - 46599725
Alignment:
| Q |
236 |
ccacaccctaacaatatctcccaaacccaaa |
266 |
Q |
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| T |
46599755 |
ccacaccctaacaatatctcccaaacccaaa |
46599725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 46599987 - 46599959
Alignment:
| Q |
17 |
agaagatgtgaggaaatttcaaagaggac |
45 |
Q |
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| T |
46599987 |
agaagatgtgaggaaatttcaaagaggac |
46599959 |
T |
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