View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_24 (Length: 278)
Name: NF18586_low_24
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 263
Target Start/End: Complemental strand, 48676261 - 48675998
Alignment:
| Q |
2 |
gaggaggaaaagttttaaaaaggaaaggaaagtaaggcaacaggaagacacaatggctctatagaaagtgaaaactaacttttaatattcaatagttctt |
101 |
Q |
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| T |
48676261 |
gaggaggaaaagttttaaaaaggaaaggaaagtaaggcaacaggaagacacaatggctctatagaaagtgaaaactaacttttaatattcaatagttctt |
48676162 |
T |
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| Q |
102 |
cctttnnnnnnnnncattcaatatttatttatgtgcatggnnnnnnnncagtggaatgcgtcatgtaattgaaatagtccaacgcaaaaacgacatttaa |
201 |
Q |
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| T |
48676161 |
cctttaaaaaaaaatattcaatagttatttatgtgcatgagttttttttagtggaatgcgtcatgtaattgaaatagtccaacgcaaaaacgacatttaa |
48676062 |
T |
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| Q |
202 |
gattattataaaatgattaattaaatgtaatttt--cacacacccaaatattacatttaaatat |
263 |
Q |
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| T |
48676061 |
gattattataaaatgattaattaaatgtaattttcacacacacccaaatattacatttaaatat |
48675998 |
T |
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