View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_25 (Length: 264)
Name: NF18586_low_25
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_25 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 4183252 - 4183503
Alignment:
| Q |
13 |
aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgnnnnnnn |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183252 |
aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgttttttt |
4183351 |
T |
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| Q |
113 |
gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183352 |
gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
4183451 |
T |
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| Q |
213 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4183452 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaa |
4183503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 4744096 - 4744344
Alignment:
| Q |
13 |
aatattcccggtccttgaatgaggtgacgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgnnnnnnn |
112 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4744096 |
aatattccaggtccttgaatgaggtgatgatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaatttctctgttttttt |
4744195 |
T |
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| Q |
113 |
gataataatcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
212 |
Q |
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| T |
4744196 |
gataa---tcgcgtacagaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatt |
4744292 |
T |
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| Q |
213 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaa |
264 |
Q |
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| T |
4744293 |
tatcaaaggaggcaatatcttgaatttacgaatggaagggttacacagaaaa |
4744344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 259
Target Start/End: Complemental strand, 51858287 - 51858169
Alignment:
| Q |
141 |
aatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaattta |
240 |
Q |
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||||||||| ||| ||||||||||||||| |||||||| ||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||| |
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| T |
51858287 |
aatcttatagttattagtgaaacgatcataaactaaggtgaatgaggattgtaaataattttggtctggatttattaaaggaggcaatatcttgaatttt |
51858188 |
T |
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| Q |
241 |
cgaatggaagggttacaca |
259 |
Q |
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| T |
51858187 |
ctaatggaagggttacaca |
51858169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 51829429 - 51829305
Alignment:
| Q |
132 |
aagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatc |
231 |
Q |
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|||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||| |||| |||| || ||||||||||||||||| |
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| T |
51829429 |
aagagcaataatcttataattatgagtgaaacgatcatacactaaggtaa---aggttggtatataatttttctctggagttgtcaaaggaggcaatatc |
51829333 |
T |
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| Q |
232 |
ttgaatttacgaatggaagggttacaca |
259 |
Q |
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|| ||||| | ||||||||||| |||| |
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| T |
51829332 |
ttaaattttctgatggaagggttgcaca |
51829305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 257
Target Start/End: Original strand, 51763296 - 51763411
Alignment:
| Q |
139 |
ataatcttataattagaagtgaaacgatcatagactaaggtaaatgaggtttgtaaatatttttggcttggatttatcaaaggaggcaatatcttgaatt |
238 |
Q |
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||||| ||||||||| ||||||| ||| |||||||| ||| || ||||||| ||||| |||||| ||||||||| | |||||||||||||||||| |
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| T |
51763296 |
ataatgttataattattagtgaaaagatgatagactagggtgaacaaggtttgaaaataattttgggctggatttatga---gaggcaatatcttgaatt |
51763392 |
T |
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| Q |
239 |
tacgaatggaagggttaca |
257 |
Q |
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| | ||||||||||||||| |
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| T |
51763393 |
tcctaatggaagggttaca |
51763411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 51221501 - 51221533
Alignment:
| Q |
65 |
tccaataatcggtacccaaagtatgaacattaa |
97 |
Q |
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| T |
51221501 |
tccaataatcggtacccaaagtatgaacattaa |
51221533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 51757023 - 51757079
Alignment:
| Q |
41 |
gatttgggaaatcatgaatccctttccaataatcggtacccaaagtatgaacattaa |
97 |
Q |
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|||||||||| || || |||| | |||||||||||||||||||||||||||| |||| |
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| T |
51757023 |
gatttgggaagtcctggatccttctccaataatcggtacccaaagtatgaacgttaa |
51757079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 51858357 - 51858325
Alignment:
| Q |
65 |
tccaataatcggtacccaaagtatgaacattaa |
97 |
Q |
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| T |
51858357 |
tccaataatcggtacccaaagtatgaacattaa |
51858325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 51757105 - 51757158
Alignment:
| Q |
129 |
agaaagagcgataatcttataattagaagtgaaacgatcatagactaaggtaaa |
182 |
Q |
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||||| ||| |||||||| |||||| |||||||||||| |||||||||||||| |
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| T |
51757105 |
agaaatagcaataatcttgtaattattagtgaaacgatcgtagactaaggtaaa |
51757158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 51763230 - 51763266
Alignment:
| Q |
65 |
tccaataatcggtacccaaagtatgaacattaatttct |
102 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
51763230 |
tccaataatcggtacccaaagta-gaacattaatttct |
51763266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 51854700 - 51854663
Alignment:
| Q |
65 |
tccaataatcggtacccaaagtatgaacattaatttct |
102 |
Q |
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|||||||||||||||||||||||||| |||||| |||| |
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| T |
51854700 |
tccaataatcggtacccaaagtatgagcattaacttct |
51854663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 771956 - 771999
Alignment:
| Q |
216 |
caaaggaggcaatatcttgaatttacgaatggaagggttacaca |
259 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
771956 |
caaaggaggcaatatcttgaatttttgaatggaagggttccaca |
771999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 43997316 - 43997276
Alignment:
| Q |
65 |
tccaataatcggtacccaaagtatgaacattaatttctctg |
105 |
Q |
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| T |
43997316 |
tccaataattagtacccaaagtatgaacattaacttctctg |
43997276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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