View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18586_low_28 (Length: 239)

Name: NF18586_low_28
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18586_low_28
NF18586_low_28
[»] chr4 (6 HSPs)
chr4 (1-222)||(29563515-29563735)
chr4 (1-70)||(24193467-24193538)
chr4 (34-70)||(35533344-35533380)
chr4 (25-65)||(36460468-36460508)
chr4 (25-65)||(36461959-36461999)
chr4 (21-65)||(40709519-40709563)
[»] chr8 (3 HSPs)
chr8 (1-65)||(34563137-34563203)
chr8 (33-70)||(31296004-31296041)
chr8 (33-65)||(7008516-7008548)
[»] chr7 (3 HSPs)
chr7 (33-71)||(2221846-2221884)
chr7 (25-70)||(22388047-22388092)
chr7 (18-70)||(30133933-30133985)
[»] chr6 (5 HSPs)
chr6 (25-59)||(8349807-8349841)
chr6 (33-70)||(2785819-2785856)
chr6 (25-70)||(31828914-31828959)
chr6 (33-65)||(9041568-9041600)
chr6 (38-70)||(31958701-31958733)
[»] chr3 (4 HSPs)
chr3 (25-63)||(29094270-29094308)
chr3 (21-70)||(20143821-20143870)
chr3 (21-70)||(23269319-23269368)
chr3 (33-65)||(22723949-22723981)
[»] chr2 (4 HSPs)
chr2 (27-65)||(5043694-5043732)
chr2 (25-70)||(5942807-5942852)
chr2 (26-70)||(19333429-19333473)
chr2 (18-70)||(40158645-40158697)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-70)||(27458-27495)
[»] chr5 (6 HSPs)
chr5 (33-70)||(7550618-7550655)
chr5 (25-70)||(13782009-13782054)
chr5 (33-70)||(26516180-26516217)
chr5 (33-70)||(39257537-39257574)
chr5 (33-65)||(11911801-11911833)
chr5 (33-69)||(23999039-23999075)
[»] chr1 (4 HSPs)
chr1 (33-70)||(5923372-5923409)
chr1 (33-70)||(21516255-21516292)
chr1 (25-65)||(24775162-24775202)
chr1 (33-65)||(52013784-52013816)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29563515 - 29563735
Alignment:
Q  1 ataacttatatatacgtacttataataagtggttatgctataagcgtttaattaagttgtttatcgaaaccaaattgatcgaaaaaacaatacaatgata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29563515 ataacttatatatacgtacttataataagtggttatgctataagcgtttaattaagttgtttatc-aaaccaaattgatcgaaaaaacaatacaatgata 29563613  T
Q  101 gaataaaaatgaaagtttgaaggagaaagtgaaactaacagaaacaagggtatgaactgcagatcttagagtccgttccatcttggaacgagtcctttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563614 gaataaaaatgaaagtttgaaggagaaagtgaaactaacagaaacaagggtatgaactgcagatcttagagtccgttccatcttggaacgagtcctttcc 29563713  T
Q  201 aacttcttaacagctatctctt 222  Q
    ||||||||||||||||||||||    
T  29563714 aacttcttaacagctatctctt 29563735  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24193538 - 24193467
Alignment:
Q  1 ataacttatatatacgtacttata--ataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||| ||| |||||||||  ||||| | |||||||||||| | | |||||||||||||||| ||||    
T  24193538 ataacttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaac 24193467  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 35533344 - 35533380
Alignment:
Q  34 tatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  35533344 tatgctataagcgcttaattaagttgtttatggaaac 35533380  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 36460508 - 36460468
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    ||||||| ||||||||||||||| |||||||| ||||||||    
T  36460508 ataagtgtttatgctataagcgtctaattaagctgtttatc 36460468  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 36461999 - 36461959
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||||||||||| ||| |||||||| |||||    
T  36461999 ataagtggttatgctataagcgcttatttaagttggttatc 36461959  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 40709519 - 40709563
Alignment:
Q  21 tataataagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||    
T  40709519 tatattaagtggttatgatataagcacttaattaagttgtttatc 40709563  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34563203 - 34563137
Alignment:
Q  1 ataacttatatatacgtacttata--ataagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||| | |||||||  |||| || |||||||||||||||||||||||||||||||||    
T  34563203 ataacttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 31296041 - 31296004
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  31296041 ttatactataatcgtttaattaagttgtttatcgaaac 31296004  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 7008548 - 7008516
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||| ||||||||||||||||||    
T  7008548 ttatgctataagcgcttaattaagttgtttatc 7008516  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 2221884 - 2221846
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaacc 71  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  2221884 ttatgctataagtgtttaattaagttgtttatccaaacc 2221846  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 22388047 - 22388092
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||| ||||| |||||||| |||||||||||||||||| ||||    
T  22388047 ataagtgtttatgttataagcgcttaattaagttgtttatccaaac 22388092  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 30133985 - 30133933
Alignment:
Q  18 acttataataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||| ||||| | ||||||||||||| ||||||| ||||||||||| ||||    
T  30133985 acttatgataagcgcttatgctataagcatttaattgagttgtttatccaaac 30133933  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 8349807 - 8349841
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttg 59  Q
    |||||||||||||||||||||| ||||||||||||    
T  8349807 ataagtggttatgctataagcgcttaattaagttg 8349841  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 2785819 - 2785856
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  2785819 ttatgctataagcgattaattaagttgtttatccaaac 2785856  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31828959 - 31828914
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||| ||| |||||||||| ||||||||||||||||| |||||    
T  31828959 ataagtgtttacgctataagcgcttaattaagttgtttatagaaac 31828914  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 9041568 - 9041600
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||| ||||||||||||||||||    
T  9041568 ttatgctataagcgcttaattaagttgtttatc 9041600  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 31958701 - 31958733
Alignment:
Q  38 ctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||||||||||||||||| ||||    
T  31958701 ctataagcgtttaattaagttgtttatcaaaac 31958733  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 29094308 - 29094270
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgttta 63  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  29094308 ataagtgtttatgctataagcgtttaattaagctgttta 29094270  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 20143870 - 20143821
Alignment:
Q  21 tataataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||||||| ||||||||||| | |||| |||||||||||||| ||||    
T  20143870 tataataagtgtttatgctataaacctttagttaagttgtttatccaaac 20143821  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23269319 - 23269368
Alignment:
Q  21 tataataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||||||| ||||||||||| | |||| |||||||||||||| ||||    
T  23269319 tataataagtgtttatgctataaacctttagttaagttgtttatccaaac 23269368  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 22723981 - 22723949
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||| ||||||||||||||||||    
T  22723981 ttatgctataagcgcttaattaagttgtttatc 22723949  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 5043694 - 5043732
Alignment:
Q  27 aagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5043694 aagtggttatgctataagcgcttaatttagttgtttatc 5043732  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 5942852 - 5942807
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  5942852 ataagtgcttatgcaataagcgcttaattaagttgtttatccaaac 5942807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 19333429 - 19333473
Alignment:
Q  26 taagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||| ||||||||||||||||||||| ||||| ||||| ||||    
T  19333429 taagtgcttatgctataagcgtttaatttagttgattatccaaac 19333473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 40158697 - 40158645
Alignment:
Q  18 acttataataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||| |||||||||||||||||||    |||||||||||||||| ||||    
T  40158697 acttataaaaagtggttatgctataagctacaaattaagttgtttatccaaac 40158645  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 27495 - 27458
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  27495 ttatgctataagcgtttatttaagttgtttatccaaac 27458  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 7550618 - 7550655
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  7550618 ttatgctataagcgtttaatgaagttgtttatctaaac 7550655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 13782009 - 13782054
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||| |||||| ||||||| |||||||||||||||||| ||||    
T  13782009 ataagtgcttatgccataagcgcttaattaagttgtttatctaaac 13782054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 26516217 - 26516180
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  26516217 ttatgctataagcgcttaattaagttgtttatccaaac 26516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 39257537 - 39257574
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  39257537 ttatgctataagcgcttaattaagttgtttatccaaac 39257574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 11911833 - 11911801
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatc 65  Q
    ||||||||| |||||||||||||||||||||||    
T  11911833 ttatgctattagcgtttaattaagttgtttatc 11911801  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 23999075 - 23999039
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaa 69  Q
    |||| |||||||| |||||||||||||||||||||||    
T  23999075 ttattctataagcatttaattaagttgtttatcgaaa 23999039  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 5923409 - 5923372
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  5923409 ttatgctataagcgtataattaagttgtttatccaaac 5923372  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 21516292 - 21516255
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatcgaaac 70  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  21516292 ttatgttataagcgtttaattaagttgtttatccaaac 21516255  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 24775202 - 24775162
Alignment:
Q  25 ataagtggttatgctataagcgtttaattaagttgtttatc 65  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  24775202 ataagtggttatgctataagtgtttaatttagttatttatc 24775162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 52013816 - 52013784
Alignment:
Q  33 ttatgctataagcgtttaattaagttgtttatc 65  Q
    ||||||||||| |||||||||||||||||||||    
T  52013816 ttatgctataaacgtttaattaagttgtttatc 52013784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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