View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18586_low_30 (Length: 227)

Name: NF18586_low_30
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18586_low_30
NF18586_low_30
[»] chr6 (2 HSPs)
chr6 (19-212)||(4183683-4183876)
chr6 (19-211)||(4744523-4744715)
[»] chr1 (8 HSPs)
chr1 (33-189)||(51382140-51382296)
chr1 (39-196)||(51857808-51857965)
chr1 (75-191)||(51763628-51763744)
chr1 (33-196)||(51781992-51782155)
chr1 (53-184)||(51221896-51222027)
chr1 (33-196)||(51831605-51831768)
chr1 (69-196)||(51828985-51829113)
chr1 (83-163)||(25611721-25611801)
[»] scaffold0015 (1 HSPs)
scaffold0015 (42-130)||(41141-41229)
[»] chr3 (3 HSPs)
chr3 (83-154)||(955600-955668)
chr3 (84-128)||(1941330-1941374)
chr3 (87-124)||(803982-804019)
[»] chr7 (1 HSPs)
chr7 (69-162)||(1421900-1421993)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 4183876 - 4183683
Alignment:
Q  19 actctcctccgttacttccattcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183876 actctcctccgttacttccattcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaa 4183777  T
Q  119 ttctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacctaatcttagtctctgct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183776 ttctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacctaatcttagtctctgct 4183683  T

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Target: chr6; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 4744715 - 4744523
Alignment:
Q  19 actctcctccgttacttccattcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacc-tccttcaactccgttgcgtttgcaagtcctgga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  4744715 actctcctccgttacttccattcgatcttgtggcagaaatcctctgctgtctccctgtgaaacaccctccttcaactccgttgcgtttgcaagtcctg-a 4744617  T
Q  118 attctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacctaatcttagtctctgc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4744616 attctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacctaatcttagtctctgc 4744523  T

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Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 51382296 - 51382140
Alignment:
Q  33 cttccattcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctccc 132  Q
    ||||| |||||||| |||||||||||||| |||   ||||| ||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||| |    
T  51382296 cttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctctc 51382197  T
Q  133 atgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 189  Q
    |||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||    
T  51382196 atgattccaatttcgccaagaagcaacttcgtttgtcaacctccaaccacgaccgcc 51382140  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 51857808 - 51857965
Alignment:
Q  39 ttcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgatt 138  Q
    |||||||| ||| ||||||| || |||   ||||| |||||| | |||||||||||||||||| | |||||||| ||||||||||||||||| |||||||    
T  51857808 ttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaactccgttgcatctgcaagtcatggaattctcttatctctcatgatt 51857907  T
Q  139 ccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacct 196  Q
    || ||||| | | ||| |||||||| ||||| |||||||||| |||||||||| ||||    
T  51857908 ccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgccaccacct 51857965  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 51763744 - 51763628
Alignment:
Q  75 gtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttgtccacct 174  Q
    |||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||  ||||||||  ||||| ||||||| |||||||| ||  | || |    
T  51763744 gtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttatctgtcatgattctgaattcaccaagaagcaccttcgcttcccaactt 51763645  T
Q  175 ccaaccacgaccgccac 191  Q
    ||||||| |||||||||    
T  51763644 ccaaccatgaccgccac 51763628  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 51781992 - 51782155
Alignment:
Q  33 cttccattcgatcttgtggcagaaatcctatg-ctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcc 131  Q
    ||||| |||||||| || ||||||||||| || ||| ||||| |||||||| ||| || |||||||  | || || ||||| ||||||||||||||||||    
T  51781992 cttccgttcgatctggttgcagaaatcctgtgtctg-ctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctcc 51782090  T
Q  132 catgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacct 196  Q
    |||||||| |||||||| || || ||| |||| ||||| ||||| |||||||| |||||| ||||    
T  51782091 catgattctaaattcgctaaaaaacactttcgcttgtcaacctctaaccacgatcgccaccacct 51782155  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 51222027 - 51221896
Alignment:
Q  53 agaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaag 152  Q
    ||||||||| ||| | || || |||||||||||| |||||||||| ||| | |||||||| ||||||||||||||||| |||||||  || || ||||||    
T  51222027 agaaatcctgtgccggctgcccgtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaag 51221928  T
Q  153 aaccaccttcgtttgtccacctccaaccacga 184  Q
    || || ||||| ||||| |||| |||||||||    
T  51221927 aagcaacttcgcttgtcaaccttcaaccacga 51221896  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 51831605 - 51831768
Alignment:
Q  33 cttccattcgatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctccc 132  Q
    ||||| || ||||| |||| || |||||| ||| | ||||| ||||||   ||||||||||||||||| || |||||||| ||||| |||||||||||      
T  51831605 cttccgtttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctctg 51831704  T
Q  133 atgattccaaattcgccaagaaccaccttcgtttgtccacctccaaccacgaccgccacgacct 196  Q
    | |||||||| ||| ||| ||| |||||||  ||||| |||||||||| | |||||||| ||||    
T  51831705 aagattccaatttcaccaggaagcaccttcagttgtcaacctccaacctccaccgccaccacct 51831768  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 51828985 - 51829113
Alignment:
Q  69 ctccctgtgaaacacctccttcaactccgttgcgtttgc-aagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttcgtttg 167  Q
    ||||| |||||||||||| ||||||||||||| || ||| ||||| ||||||||||||||| |  | |||||||| || |||| ||| |||||||  ||     
T  51828985 ctccccgtgaaacacctcattcaactccgttgtgtctgcaaagtcatggaattctcttatccctgaggattccaattttgccaggaaacaccttcacttc 51829084  T
Q  168 tccacctccaaccacgaccgccacgacct 196  Q
    || |||| | ||||| |||||||| ||||    
T  51829085 tcaacctacgaccacaaccgccaccacct 51829113  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 163
Target Start/End: Complemental strand, 25611801 - 25611721
Alignment:
Q  83 cctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttcg 163  Q
    |||||||||| || ||||||| |||||||| ||||||||||| || ||  ||||| |||| || | |||||| ||||||||    
T  25611801 cctccttcaattctgttgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaagaaacaccttcg 25611721  T

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Target: scaffold0015 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 41229 - 41141
Alignment:
Q  42 gatcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctc 130  Q
    ||||||||||| |||||||||||  | ||||||||||||  |||||| ||| |||||||||| |||||||| ||||||||||| |||||    
T  41229 gatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctctaatctc 41141  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 955600 - 955668
Alignment:
Q  83 cctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaa 154  Q
    |||||||||||| || |||||||| ||||| |||||||||||||||||   ||||||||| |||||||||||    
T  955600 cctccttcaacttcgatgcgtttgtaagtcttggaattctcttatctc---tgattccaacttcgccaagaa 955668  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 1941374 - 1941330
Alignment:
Q  84 ctccttcaactccgttgcgtttgcaagtcctggaattctcttatc 128  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||    
T  1941374 ctccttcaattccggtgcgtttgcaagtcgtggaattctcttatc 1941330  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 804019 - 803982
Alignment:
Q  87 cttcaactccgttgcgtttgcaagtcctggaattctct 124  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  804019 cttcaactccgatgcgtttgcaagtcatggaattctct 803982  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 162
Target Start/End: Complemental strand, 1421993 - 1421900
Alignment:
Q  69 ctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaaccaccttc 162  Q
    ||||| ||||||  |||||| ||| |||||||||| || ||||| ||||||| ||| |||||  ||||| ||||||||||||| || |||||||    
T  1421993 ctcccagtgaaattcctcctacaattccgttgcgtctgtaagtcgtggaattttctaatctcaaatgatcccaaattcgccaaaaaacaccttc 1421900  T

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