View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18586_low_32 (Length: 210)
Name: NF18586_low_32
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 46599939 - 46599814
Alignment:
| Q |
65 |
caaacctggatcagagtgtgccagccagaaaggttggttgctctaataaacacacacgcatatcaaatcgcatctaatctattctacagagtcattgtat |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46599939 |
caaacctggatcagagtgtgccagccagaaaggttggttgctctaataaacacacacgcatatcaaatcgcatctaa-----tctacagagtcattgtat |
46599845 |
T |
|
| Q |
165 |
ttagttttagttagaccctcccacacccacca |
196 |
Q |
| |
|
||||||| ||||||||||| |||||||||||| |
|
|
| T |
46599844 |
ttagtttaagttagaccct-ccacacccacca |
46599814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 46599987 - 46599959
Alignment:
| Q |
17 |
agaagatgtgaggaaatttcaaagaggac |
45 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
46599987 |
agaagatgtgaggaaatttcaaagaggac |
46599959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University