View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18586_low_5 (Length: 652)

Name: NF18586_low_5
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18586_low_5
NF18586_low_5
[»] chr6 (16 HSPs)
chr6 (21-546)||(11195354-11195894)
chr6 (18-546)||(11154907-11155450)
chr6 (298-436)||(11246449-11246591)
chr6 (163-462)||(11208096-11208391)
chr6 (24-160)||(11242016-11242153)
chr6 (24-134)||(11165386-11165496)
chr6 (24-134)||(11208435-11208545)
chr6 (24-161)||(11169586-11169723)
chr6 (33-114)||(11315745-11315826)
chr6 (283-342)||(11315989-11316048)
chr6 (24-161)||(11274970-11275107)
chr6 (181-246)||(11315911-11315976)
chr6 (175-450)||(11169286-11169557)
chr6 (36-135)||(11132051-11132150)
chr6 (283-462)||(11273084-11273259)
chr6 (168-244)||(11274872-11274948)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 21 - 546
Target Start/End: Complemental strand, 11195894 - 11195354
Alignment:
Q  21 tgtactagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaa 120  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| |    
T  11195894 tgtattagagaagtatgcatacaacatgaggaatgcgataaatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagca 11195795  T
Q  121 attgatttggtcttaaggtggttcgatgttaatgtggttgcg---------------gagtattatacgagcattctttcaagtgtatttgattcaatta 205  Q
    |||||||||||||| | |||| |||||||||| |||||||||               |||||||||||||||||||||||||||||||||||| || |||    
T  11195794 attgatttggtcttcatgtggctcgatgttaacgtggttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagtta 11195695  T
Q  206 tggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagttatgcagtaaacnnnnnnngaaatcgttggttaccgttattact 305  Q
    | |||||||| ||||| ||||||  ||||||| ||||||| |||| ||||||| |  ||||||||||          |||| ||||||||     |||||    
T  11195694 tagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttgggaatgcagtaaagaataaaaagaatcattggttacaaactttact 11195595  T
Q  306 aaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttgnnnnnnngttaaaacttc 405  Q
    ||||||| |||||   |||||||| |||||||||||| |||||||||| |||||||| |||    | |||||||||||| |         ||||||||||    
T  11195594 aaaatattctttcattatagtgtacgcagctgcaacaactaacatcactgggctagcctctcagctcattgttgactttgtaaaaaaagattaaaacttc 11195495  T
Q  406 attcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataatttgttcggtgtccttacagatgtatacgagttctgtatatat 505  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||   || |||||| ||||||| || ||||||||||||    
T  11195494 attcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataatttattcaacgtgcttacaaatgtatatgacttctgtatatat 11195395  T
Q  506 gttaagattcatgattttcctctttgcaacttgcttaatat 546  Q
    ||||||||| ||  ||| |||||||||||||||||||||||    
T  11195394 gttaagattaatcttttccctctttgcaacttgcttaatat 11195354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 18 - 546
Target Start/End: Complemental strand, 11155450 - 11154907
Alignment:
Q  18 agttgtactagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaa 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||     
T  11155450 agttgtactagagacgtatgcatacaacatgaggaatgctataaatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataat 11155351  T
Q  118 gaaattgatttggtcttaaggtggttcgatgttaatgtggttgcg---------------gagtattatacgagcattctttcaagtgtatttgattcaa 202  Q
    | | ||||||||||||| | |||| |||||||||| ||| |||||               |||||||||||||||||||||||||||||||||||| ||     
T  11155350 gcacttgatttggtctttacgtggctcgatgttaacgtgattgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcag 11155251  T
Q  203 ttatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagttatgcagtaaacnnnnnnngaaatcgttggttaccgttatt 302  Q
    |||| |||||||| ||||| ||||||  ||||||| ||||||| |||| ||||||| |  ||||||||||          |||| ||||  ||     ||    
T  11155250 ttatagtgaagaagataaatgatgagaggcatggtgtgcaagagggtattatggttgggaatgcagtaaagaataaaaagaatcattggaaacaaacttt 11155151  T
Q  303 actaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttgnnnnnnngttaaaac 402  Q
    |||||||||| |||||   |||||  |||||||||||||| ||||||||||||||||||| |||    | |||||||||||| |         |||||||    
T  11155150 actaaaatattctttcattatagtccatgcagctgcaacaactaacatcaccgggctagcctctcaactcattgttgactttgtaaaaaaagattaaaac 11155051  T
Q  403 ttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataatttgttcggtgtccttacagatgtatacgagttctgtata 502  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||   || |||| | ||||||| || |||||||||    
T  11155050 ttcattcaaattgtattgtaaaatttcaagtttaaggtgacaatgtcaactatatgataatttgttcaacgtgcttataaatgtatatgacttctgtata 11154951  T
Q  503 tatgttaagattcatgattttcctctttgcaacttgcttaatat 546  Q
    ||||| ||| || ||  ||| |||||||||||||||||||||||    
T  11154950 tatgtcaaggttaatcttttccctctttgcaacttgcttaatat 11154907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 298 - 436
Target Start/End: Original strand, 11246449 - 11246591
Alignment:
Q  298 ttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgactttttg----nnnnnn 393  Q
    |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||              
T  11246449 ttatcactaaaatatactttccagatagtgtttgcagctgcaacaactaacatcatcgggctagcttcttctataattgttgactttatgaagaaaaaaa 11246548  T
Q  394 ngttaaaacttcattcaaattgtattgttaaatttcaagttta 436  Q
     ||||||||||||||||||||||||||| ||||||| ||||||    
T  11246549 agttaaaacttcattcaaattgtattgtgaaatttctagttta 11246591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 163 - 462
Target Start/End: Complemental strand, 11208391 - 11208096
Alignment:
Q  163 gagtattatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagtt 262  Q
    |||| ||||| |||||||||||||||||| |||||| |||||||  ||||||  ||||||||||||| ||||||| || ||||||||||||||||| |      
T  11208391 gagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatgaggggcatggtgtggaagaaggtactatggttgggc 11208292  T
Q  263 atgcagtaaacnnnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagc 362  Q
    || |||| ||          |||||||||||||| ||||||   ||||||  |||||||| |||||||||||||||||||  | ||||||||||| |||     
T  11208291 atccagtgaagaaaaagaagaatcgttggttaccattattagccaaatattgtttccagacagtgtatgcagctgcaacaggtgacatcaccgggatagt 11208192  T
Q  363 ttcttctataattgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 462  Q
    |||||||  ||||||||||||| |        |||||| |||||||||||||||| ||| ||||||||  ||||  | ||||||||||||||||| ||||    
T  11208191 ttcttctggaattgttgactttat---aaaaagttaaaccttcattcaaattgtactgtgaaatttcatattta-agcgacaatgtcaactatataataa 11208096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 11242016 - 11242153
Alignment:
Q  24 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaa--agaaaaggaaatgatcaataaagaaa 121  Q
    |||| ||| ||||||||||||||| ||||||||||||||||||||||||||| ||| || |||||||| |||  | ||||||||| ||| ||||||| ||    
T  11242016 actaaagaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaa 11242115  T
Q  122 ttgatttggtcttaaggtggttcgatgttaatgtggttg 160  Q
    || |||||||||| |  ||| | ||||||||||||||||    
T  11242116 tt-atttggtcttcacatggcttgatgttaatgtggttg 11242153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 11165496 - 11165386
Alignment:
Q  24 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaatt 123  Q
    |||||||| ||| |||||||| |||||| || |||||||||||   ||| |||||| || |||||||||||||||||||||||  |||||||| | | ||    
T  11165496 actagagaggtacgcatacaatatgagggattccataaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagtt 11165397  T
Q  124 gatttggtctt 134  Q
    |||||||||||    
T  11165396 gatttggtctt 11165386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 134
Target Start/End: Complemental strand, 11208545 - 11208435
Alignment:
Q  24 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaatt 123  Q
    |||||||| ||| |||||||| |||||| || |||||||||||   ||  |||||| || ||||||||||||||||||||||| ||||||||| | | ||    
T  11208545 actagagaagtacgcatacaatatgagggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagtt 11208446  T
Q  124 gatttggtctt 134  Q
    |||||||||||    
T  11208445 gatttggtctt 11208435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 11169723 - 11169586
Alignment:
Q  24 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaatt 123  Q
    |||||||| ||| |||||||| |||||| |   ||||||||||  ||||||||||| || | |||||||||||||||||| ||  |||||||| | || |    
T  11169723 actagagatgtacgcatacaatatgagggaattcataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaact 11169624  T
Q  124 gatttggtcttaaggtggttcgatgttaatgtggttgc 161  Q
    ||||||||||| | |||| | || ||||||||||||||    
T  11169623 gatttggtctttaagtggcttgacgttaatgtggttgc 11169586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 33 - 114
Target Start/End: Original strand, 11315745 - 11315826
Alignment:
Q  33 gtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaat 114  Q
    |||||||||||| |||| | ||||||| |||||||||||||||||||| | ||||| ||||||||||||| ||| |||||||    
T  11315745 gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaat 11315826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 11315989 - 11316048
Alignment:
Q  283 aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaaca 342  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||  ||||||||||    
T  11315989 aatcattggttaccgttattactaaaatatactttccaggtagtgtatatagctgcaaca 11316048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 11275107 - 11274970
Alignment:
Q  24 actagagacgtatgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaatt 123  Q
    |||||||| ||| |||||||| |||||| ||  ||||||||||   ||||||| || || |||||| | ||||||||||||||  |||||||| | || |    
T  11275107 actagagaagtacgcatacaatatgagggatttcataaatgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaact 11275008  T
Q  124 gatttggtcttaaggtggttcgatgttaatgtggttgc 161  Q
    ||||||||||| | |||| | || ||||||||||||||    
T  11275007 gatttggtctttaagtggcttgacgttaatgtggttgc 11274970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 11315911 - 11315976
Alignment:
Q  181 ctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaa 246  Q
    ||||||||||| ||||||  |||||| |||||||| ||||||||||||||||||||| ||||||||    
T  11315911 ctttcaagtgtgtttgatggaattattgtgaagaagataaaggatgaggagcatggtgtgcaagaa 11315976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 175 - 450
Target Start/End: Complemental strand, 11169557 - 11169286
Alignment:
Q  175 agcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaagaaggtactatggttagttatgcagtaaacn 274  Q
    ||||||||||||||||| |||||| ||||| |  | ||||  |||||||||||||  ||| || |||||||||||||||||||| |  || | || |||     
T  11169557 agcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgtgcaagaaggtactatggttggacatcccgtgaaca 11169458  T
Q  275 nnnnnngaaatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataat 374  Q
            |||||||||||||| ||||||   ||||||  |||| ||| ||||||||||||| |||||  | ||||||||||  ||| ||||||| ||||    
T  11169457 aaaaaaagaatcgttggttaccattattagccaaatattgtttcgagacagtgtatgcagctacaacaggtgacatcaccggaatagtttcttctgtaat 11169358  T
Q  375 tgttgactttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtca 450  Q
      |||||||| |        |||||| ||||||||||||||||  || ||||||||| ||||  ||||||||||||    
T  11169357 gattgactttat---aaaaagttaaaccttcattcaaattgtaccgtgaaatttcaaattta-agtgacaatgtca 11169286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 11132150 - 11132051
Alignment:
Q  36 tgcatacaacatgaggaatgccataaatgataaggatattagcttgaggctttcgtcaaaagaaaaggaaatgatcaataaagaaattgatttggtctta 135  Q
    |||||| |||||||||||||||||||| |||||||| ||||   ||| |||||||| | |||| |||||| ||||| ||||   |||||||| |||||||    
T  11132150 tgcatataacatgaggaatgccataaacgataaggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta 11132051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 462
Target Start/End: Complemental strand, 11273259 - 11273084
Alignment:
Q  283 aatcgttggttaccgttattactaaaatatactttccagatagtgtatgcagctgcaacatctaacatcaccgggctagcttcttctataattgttgact 382  Q
    |||| ||||||| | ||||||  |||||||  |||||||  ||||||||||| | |||||  | ||||||||||  ||| ||||||| ||||||||||||    
T  11273259 aatcattggttatcattattagcaaaatattgtttccagtcagtgtatgcagttacaacaggtgacatcaccggaatagtttcttctgtaattgttgact 11273160  T
Q  383 ttttgnnnnnnngttaaaacttcattcaaattgtattgttaaatttcaagtttatggtgacaatgtcaactatatgataa 462  Q
    || |        |||||| ||||||||| ||||||  || ||||||||| ||||  ||||||||||||||||||| ||||    
T  11273159 ttat---aaaaagttaaaccttcattcatattgtacggtgaaatttcaaattta-agtgacaatgtcaactatataataa 11273084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 11274948 - 11274872
Alignment:
Q  168 ttatacgagcattctttcaagtgtatttgattcaattatggtgaagaaaataaaggatgaggagcatggtctgcaag 244  Q
    ||||| |||||||||||||||||| |||||| ||||| |  | ||||  |||||||||||||  |||||| ||||||    
T  11274948 ttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacatggtgtgcaag 11274872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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