View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18586_low_7 (Length: 443)
Name: NF18586_low_7
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 51547101 - 51547534
Alignment:
| Q |
1 |
cacatgtttagaaagcttagattctgcttcaggtacactgaagcaagttttagttgattcagtgatcaacacttacaagcatgttagtaattctctgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51547101 |
cacatgtttagaaagcttagattctgcttcaggtacactgaagcaagttttagttgattcagtgatcaacacttacaaacatgttagtaattctctgtca |
51547200 |
T |
|
| Q |
101 |
atgtttcctaagcctgaggtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcacgtggttatcaagcaaagatcgccgcaggttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
51547201 |
atgtttcctaagcctgaggtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcatgtggttatcaagcaaagatcaccgcaggttct |
51547300 |
T |
|
| Q |
201 |
tgcaaagcaccgacaatgtgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547301 |
tgcaaagcaccgacaatgtgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgc |
51547400 |
T |
|
| Q |
301 |
taggataataatctatgtaaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatctc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51547401 |
taggataataatctatgtaaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatcaa |
51547500 |
T |
|
| Q |
401 |
actgtcattactggcaatagaagtgatgttgatg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
51547501 |
actgtcattactggcaatagaagtgatgttgatg |
51547534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 434
Target Start/End: Original strand, 19475223 - 19475426
Alignment:
| Q |
231 |
ctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggat |
330 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||| || || | |||||||||||||| || | | ||||||| | || ||||| ||||||||| |
|
|
| T |
19475223 |
ctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataatagtttggttaggatagttatttatgttaaagaagggta |
19475322 |
T |
|
| Q |
331 |
atatgaggaaaatgttgaaatttcaagcaataaaaccaatattgttctacttggtgatggaagggatctcactgtcattactggcaatagaagtgatgtt |
430 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||| || ||||| | |||||||||||||| ||| |||||||| ||||| || ||||||| |||| |
|
|
| T |
19475323 |
ttatgatgaaaatgttgaaataccaagttataaaactaacattgtgatgcttggtgatggaagtgattctactgtcatcactggtaacagaagtgttgtt |
19475422 |
T |
|
| Q |
431 |
gatg |
434 |
Q |
| |
|
|||| |
|
|
| T |
19475423 |
gatg |
19475426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University