View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18586_low_9 (Length: 436)
Name: NF18586_low_9
Description: NF18586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18586_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Original strand, 36309385 - 36309793
Alignment:
| Q |
12 |
tagcaaagggtgcaaaacaacctccgattcaacctgcgtggcatagagaacttctaaacgcaagagatcctccacatgtcacattcaaccaccgcgaata |
111 |
Q |
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| T |
36309385 |
tagcaaagggtgcaaaacaacctccgattcaacctgcgtggcatagagagcttctaaacgcaagagatcctccacatgtcacattcaaccaccgcgaata |
36309484 |
T |
|
| Q |
112 |
cgaacaactaactgatgtccaaactgataccgttttaacggcaacagaattttcagaacgatctttcttctttggacctgtggagatatctgcaatacga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36309485 |
cgaacaactaactgatgtccaaactgataccgttttaacggcaacagaattttcagaacgatctttcttctttggacctgtggagatatctgcaatacga |
36309584 |
T |
|
| Q |
212 |
aacctacttccacgtcatctcgacaacgcatcaaccacctttgaagtcctcacatcgtacatttggcgttcccgcacaaaagctttgaaattaaacccaa |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36309585 |
aacctacttccacgtcatctcgacaacgcatcaaccacctttgaagtcctcacatcgtacatttggcgttcccacacaaaagctttgaaattaaacccaa |
36309684 |
T |
|
| Q |
312 |
ccgaagaggttcgaatgatgtgcatcgtggacgcacgtggtaaattcaaccctcccattccagttggttattatggaaattgtttcgcattcccaacagc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36309685 |
ccgaagaggttcgaatgatgtgcatcgtggacgcacgtggtaaattcaaccctcccattccagttggttattatggaaattgtttcgcattcccagcagc |
36309784 |
T |
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| Q |
412 |
ggttgcaac |
420 |
Q |
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| T |
36309785 |
ggttgcaac |
36309793 |
T |
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