View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_1 (Length: 795)
Name: NF18587_high_1
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 266
Target Start/End: Original strand, 3530131 - 3530381
Alignment:
| Q |
15 |
catagggtgggaaaagtaatagtgtttgttttttagttaggtgaatcatcccaactacccaaccaaacaaacacacattaagacgtcaataacagcttca |
114 |
Q |
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| T |
3530131 |
catagggtgggaaaagtaat-gtctttgttttttagttaggtgaatcatcccaactacccaaccaaacaaacacacattaagacgtcaataacagcgtca |
3530229 |
T |
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| Q |
115 |
agacacttccatattttttaatcacatttccagttttgctggaaagtcagtaccaaactaaatctaggcggagaaatatatgcaaagtacagtgaagatg |
214 |
Q |
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| T |
3530230 |
agacacttccatattttttaatcacatttccagttttgctggaaagtcagtaccaaactaaatctaggcggagaaatatatgcaaagtacagtgaagatg |
3530329 |
T |
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| Q |
215 |
catacttttcttcctctttccacattcatatttatacctctttttcatcaat |
266 |
Q |
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| T |
3530330 |
catacttttcttcctctttccacattcatatttatacctctttttcatcaat |
3530381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 556 - 778
Target Start/End: Original strand, 3530671 - 3530893
Alignment:
| Q |
556 |
gaatttgttcctgatttggatgaaacccagatcataaaaaagagatctttatcaccttctggtctatgtgctcagatagagaaattggttttgtgtaata |
655 |
Q |
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| T |
3530671 |
gaatttgttcctgatttggatgaaacccagatcataaaaaagagatctttatcaccttctggtctatgtgctcagatagagaaattggttttgtgtaata |
3530770 |
T |
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| Q |
656 |
agtttatggaggcaatggaattgtttgaaatgttggagcttgaaaatgctgaatcttatgttggtgctagtacttatgatgctttgataagtgcttgtat |
755 |
Q |
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| T |
3530771 |
agtttatggaggcaatggaattgtttgaaatgttggagcttgaaaatgctgaatcttatgttggtgctagtacttatgatgctttgataagtgcttgtat |
3530870 |
T |
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| Q |
756 |
tcgtttgagatccattataggtg |
778 |
Q |
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| T |
3530871 |
tcgtttgagatccattataggtg |
3530893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 312 - 515
Target Start/End: Original strand, 3530427 - 3530630
Alignment:
| Q |
312 |
ttgtgtcttgtgttattgttgttaattgtcaacaatattaacaatggaaactttttctttagatcagttcaaatccttgtcctttcttggttctttttct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530427 |
ttgtgtcttgtgttattgttgttaattgtcaacaatattaacaatggaaactttttctatagatcagttcaaatccttgtcctttcttggttctttttct |
3530526 |
T |
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| Q |
412 |
tcaaatccaagaaaaaactgnnnnnnngcatcaaagatgaagaattggacaaaatccatttctcagatttcttgttgttctacaatggaacaagtgttac |
511 |
Q |
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| T |
3530527 |
tcaaatccaagaaaaaactgtttttttgcatcaaagatgaagaattggacaaaatccatttctcagatttcttgttgttctacaatggaacaagtgttac |
3530626 |
T |
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| Q |
512 |
gtcc |
515 |
Q |
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|||| |
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| T |
3530627 |
gtcc |
3530630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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