View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_10 (Length: 368)
Name: NF18587_high_10
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 38462056 - 38462386
Alignment:
| Q |
18 |
aaattttcattacaggtgttgttagcattattcttgtgtgatgttatataaacttttatcatatagatcatcgttaaagttttaaaacgattttcaaata |
117 |
Q |
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| T |
38462056 |
aaattttcattacaggtgttgttagcattattcttgtgtgatgctata--aacttttattatatagatcatcgttaaagttttaaa-caattttcaaata |
38462152 |
T |
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| Q |
118 |
ttatatgaaatgcttttccacaagaagcaaccaattttannnnnnnnactgaaaatatagaaatttgctcataattttgtgctaagaagaatgacacatc |
217 |
Q |
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| T |
38462153 |
ttatatgaaatgcttttccacaaggagcagccaatttt-----ttttactaaaaatatagaaatttgctcataattttgtgctaagaagaatgacacatc |
38462247 |
T |
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| Q |
218 |
acattcgacatatgagttggtagttgcagagcaagtatggaataaattagcacttttgtaatattgcaatgtgaatgtcacatgatattgacatcctaat |
317 |
Q |
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| T |
38462248 |
acattcgacatatgagttggtagttgcagagcaagtatgaaatacattagcacttttgtaatattgggatgtcaatgtcacatgacattaacattctaat |
38462347 |
T |
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| Q |
318 |
gtcatcaaagtgctatccgaaatacatggagtataatcta |
357 |
Q |
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| T |
38462348 |
gtcatcaaagtgctatccgaaatacat-gagtataatcta |
38462386 |
T |
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