View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18587_high_12 (Length: 332)
Name: NF18587_high_12
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 719391 - 719239
Alignment:
| Q |
14 |
atcatacttaagtacacataaacccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactatttgataatta |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719391 |
atcatacttaagtacacataatcccaacaaaaaaggaaattagcttcttataatcatgcccgttggttaaataagataggatgatactatttgataatta |
719292 |
T |
|
| Q |
114 |
aataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
719291 |
aataattttctgtttaacctttgataaggatatcaattcgatctaaattgcac |
719239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 199 - 332
Target Start/End: Complemental strand, 719206 - 719080
Alignment:
| Q |
199 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagaccttgtagataatagaagcataca |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
719206 |
gatactttcaaatagttctcaattaatctgcaaataaattatatcatattcaacttcaatagaggtcaaacatagac-------ataatagaagcataca |
719114 |
T |
|
| Q |
299 |
cacaattgactatatcatcagtatatatattctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
719113 |
cacaattgactatatcatcagtatatattttctt |
719080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 704070 - 704026
Alignment:
| Q |
199 |
gatactttcaaatagttctcaattaatctgcaaataaattatatc |
243 |
Q |
| |
|
|||| ||| ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
704070 |
gatatttttaaatatttctcaattaatctgcaaataaattttatc |
704026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University