View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_19 (Length: 257)
Name: NF18587_high_19
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_19 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 49766414 - 49766613
Alignment:
| Q |
58 |
aacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctcttggaagaa |
157 |
Q |
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| T |
49766414 |
aacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagtagtattactaaagctcttggaagaa |
49766513 |
T |
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| Q |
158 |
gttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagttactacctc |
257 |
Q |
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| T |
49766514 |
gttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatctgcatcaaccatagagttactacctc |
49766613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 49766366 - 49766396
Alignment:
| Q |
10 |
agaacctgtgttgttgctattaggactgtta |
40 |
Q |
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| T |
49766366 |
agaacctgtgttgttgctattaggactgtta |
49766396 |
T |
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