View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_23 (Length: 232)
Name: NF18587_high_23
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 49766814 - 49766590
Alignment:
| Q |
1 |
catcttcttctctctcactctctgtttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttt |
100 |
Q |
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| T |
49766814 |
catcttcttctctctcactctctgtttgtcctactaaaaatgaaaatcatggtaaacattaccaccatgaatactattctagaaaaactcgtattccttt |
49766715 |
T |
|
| Q |
101 |
tctcttagctaagagaaagaagaagaaaacctctgtttctgcatctgctacgacgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaaga |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766714 |
tctcttagctaagaaaaagaagaagaaaacctctgtttctgcatctgctacgtcgtctaatatcattttgaaacgtagcaaatcaactgcaacaccaaga |
49766615 |
T |
|
| Q |
201 |
agaggtagtaactctatggttgatg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
49766614 |
agaggtagtaactctatggttgatg |
49766590 |
T |
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