View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_24 (Length: 221)
Name: NF18587_high_24
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 29206764 - 29206950
Alignment:
| Q |
17 |
ttctccaatatcagcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagct |
116 |
Q |
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| T |
29206764 |
ttctccaatatcagcacagtgacactgaggaggaattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacttcgtaagtagct |
29206863 |
T |
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| Q |
117 |
tcgccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaacc |
203 |
Q |
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| T |
29206864 |
tcaccattggagagcagttgagtgatgaaggatgatccgtcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaacc |
29206950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 26 - 203
Target Start/End: Original strand, 29158173 - 29158344
Alignment:
| Q |
26 |
atcagcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattg |
125 |
Q |
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| T |
29158173 |
atcagtacactgacattgaggtgggattgatcttgtgcaagggcagaaatcacagcatgctgttgttgtggattt------ggtattagcttcaccattg |
29158266 |
T |
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| Q |
126 |
gagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaacc |
203 |
Q |
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| T |
29158267 |
gagagcagttgagtgatgaaggatgcccgatcgaaacgagcatcaaccatggttgaagtgaagctcaagaggaaaacc |
29158344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 203
Target Start/End: Original strand, 29161860 - 29162015
Alignment:
| Q |
48 |
gggattgattttgtgcaagggcagctattacagcatgctgttgttgtggattttacatcgtaattagcttcgccattggagagcagttgagtgatgaagg |
147 |
Q |
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| T |
29161860 |
gggaatgatcttgtgcattggcagctattacagcatcctgttgttgtggatttgacatcgtaagcagcttcaccatttgagattacttgagttatgaagg |
29161959 |
T |
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| Q |
148 |
atgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaacc |
203 |
Q |
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| T |
29161960 |
atgttggatcgaaacgagcatcaacaacagttgaagtgaagcccaaaagaaaaacc |
29162015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 29145033 - 29145110
Alignment:
| Q |
17 |
ttctccaatatcagcacagtgacactgaggagggattgattttgtgcaagggcagctattacagcatgctgttgttgt |
94 |
Q |
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| T |
29145033 |
ttctccaatatcagtacaatggcattgaggagggattgattttgtgcaagggcaggaatcacagcatgctgttgttgt |
29145110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 29153634 - 29153717
Alignment:
| Q |
120 |
ccattggagagcagttgagtgatgaaggatgctcggtcgaaacgagcatcaacaatagttgaagtgaagcccaaaaggaaaacc |
203 |
Q |
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| T |
29153634 |
ccatttgagatcacttgagttatgaaggatgttgaatcgaaacgagcatcaacaacagttgaagtgaagcccaaaaggaaaacc |
29153717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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