View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_27 (Length: 205)
Name: NF18587_high_27
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_27 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 12843590 - 12843794
Alignment:
| Q |
1 |
aagcatcaatggacgcataagcaatttgatcttcataaagattctctgcattccaattgctccttccaacttgtacaatctgatccacttcgaaatcaag |
100 |
Q |
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| T |
12843590 |
aagcatcaatggacgcataagcaatttgatcttcataaagattctctgcattccaattgctccttccaacttgtacactctgatccacttcgaaatcaag |
12843689 |
T |
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| Q |
101 |
ccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcga |
200 |
Q |
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| T |
12843690 |
ccaattcctcacaattacatttatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcga |
12843789 |
T |
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| Q |
201 |
tgatc |
205 |
Q |
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||||| |
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| T |
12843790 |
tgatc |
12843794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 12861891 - 12861687
Alignment:
| Q |
1 |
aagcatcaatggacgcataagcaatttgatcttcataaagattctctgcattccaattgctccttccaacttgtacaatctgatccacttcgaaatcaag |
100 |
Q |
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|||||||||||||||||||||||| ||||| | |||||||||||||| ||||||||| ||||| ||||||| | | |||||||||||| |||| |||| |
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| T |
12861891 |
aagcatcaatggacgcataagcaacttgatgtgcataaagattctcttgattccaattactcctaccaacttcaatactctgatccactttgaaaccaag |
12861792 |
T |
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| Q |
101 |
ccaattcctcacaattacattcatcgattcacgtgaaagattttcaccattgaacctgtaatgcctcagatcctgaggatctttccacatttgcaagcga |
200 |
Q |
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| T |
12861791 |
acatttcctcacaatttcatccatcgataaacgtgaaagagcttcaccattgaactcgtaattcctcaaatcctgaggatttttccacatttgcaagcga |
12861692 |
T |
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| Q |
201 |
tgatc |
205 |
Q |
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||||| |
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| T |
12861691 |
tgatc |
12861687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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