View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_28 (Length: 203)
Name: NF18587_high_28
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 3752954 - 3752793
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3752954 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
3752855 |
T |
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| Q |
134 |
tgttgctttat-ttttctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
3752854 |
tgttgctttattttttctcaccccatcttcaaaaatcaagtgttcctttgacttctgatgat |
3752793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 34 - 194
Target Start/End: Original strand, 45288247 - 45288408
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288247 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
45288346 |
T |
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| Q |
134 |
tgttgcttta-tttttctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
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|| ||||||| |||||||||||| |||||||||||||||||||| |||| |||||||||||| |
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| T |
45288347 |
tgctgctttattttttctcaccctatcttcaaaaatcaagtgtttctttgacttctgatgat |
45288408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 19251685 - 19251524
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
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| T |
19251685 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaacctttttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
19251586 |
T |
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| Q |
134 |
tgttgctttattttt-ctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
| |
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|| |||||||||||| ||||||| ||||||||||||||| ||||||||| |||| ||||||| |
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| T |
19251585 |
tgctgctttatttttgctcaccccatcttcaaaaatcaattgttcctttgacttttgatgat |
19251524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 19324869 - 19324708
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19324869 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaacctttttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
19324770 |
T |
|
| Q |
134 |
tgttgctttattttt-ctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
| |
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|| |||||||||||| ||||||| ||||||||||||||| ||||||||| |||| ||||||| |
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| T |
19324769 |
tgctgctttatttttgctcaccccatcttcaaaaatcaattgttcctttgacttttgatgat |
19324708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 42921740 - 42921579
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42921740 |
tagagcatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagtctt |
42921641 |
T |
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| Q |
134 |
tgttgctttat-ttttctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
| |
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|| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
42921640 |
tgctgctttattttttctcaccccatcttcaaaaatcaagtgttcctttgacttctgatgat |
42921579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 2626671 - 2626829
Alignment:
| Q |
37 |
aacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctttgt |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2626671 |
aacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctttgc |
2626770 |
T |
|
| Q |
137 |
tgcttta-tttttctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
| |
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| ||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
2626771 |
tactttattttttcacaccccatcttcaaaaatcaagtgttcctttgacttctgatgat |
2626829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 34324943 - 34324785
Alignment:
| Q |
37 |
aacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctttgt |
136 |
Q |
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|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34324943 |
aacatttacatgagaatggaacattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtttagcctttgc |
34324844 |
T |
|
| Q |
137 |
tgctttat-ttttctcacccgatcttcaaaaatcaagtgttcctttcacttctgatgat |
194 |
Q |
| |
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|||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||| |
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| T |
34324843 |
tgctttattttttctcatcccatcttcaaaaatcaagtgttcctttgacttctgatgat |
34324785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 47389018 - 47389132
Alignment:
| Q |
34 |
tagaacatttacatgagattggagcattttcttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcctt |
133 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47389018 |
tagaacatttacatgagattggagcttttttttttgacattgttttcaaccttcttgttttcttaacttgaagaacattttttctaagaagtctagcttt |
47389117 |
T |
|
| Q |
134 |
tgttgctttattttt |
148 |
Q |
| |
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|| |||||||||||| |
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|
| T |
47389118 |
tgctgctttattttt |
47389132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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