View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_high_3 (Length: 546)
Name: NF18587_high_3
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 53810816 - 53810300
Alignment:
| Q |
15 |
ttatactcctatgtgtgatttttattgtattcataatattatttgcaatgaaacgagtaacttggtttgagtgaaaataagataacttgatctagacttt |
114 |
Q |
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| T |
53810816 |
ttatactcctatgtgtgatttttattgtattcataatattatttgcaatgaaacgagtaacttggtttgagtgaaaataagataacttgatctagacttt |
53810717 |
T |
|
| Q |
115 |
ttcttctaatatatataaaaaacttaatctagactaaatggaccaccaaaaggccaacagccctgggtctnnnnnnnttagtgtccaaattctctgcctt |
214 |
Q |
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| T |
53810716 |
ttcttttaatatatataaaaaacttaatctagactaa-tggaccaccaaaaggccaacagccctgggtctaaaaaaattagtgtccaaattctctgcctt |
53810618 |
T |
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| Q |
215 |
tttatcatatgggtacgtatgagtgaaagctatcaagattcaagtcacatacttttgtcatgtttttgtagggcagtggtgtttggtattataggttatc |
314 |
Q |
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| T |
53810617 |
tttatcatatggatacgtatgagtgaaagctatcaagattcaagtcacatacttttgtcatgtttttgtagggcagtggtgtttggtattataggttatc |
53810518 |
T |
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| Q |
315 |
tacaaatttatggcataactctgcgtttatatgcttattaaggaatcaaaatagatgaagacttctcgtaaattaggatattgcaggatagcaagaactt |
414 |
Q |
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| T |
53810517 |
tgcaaattcatggcataactctgcgtttatatgcttattacggaatcaaaatagatgaagacttctcgtaaattaggatattgcaggatagcaagaactt |
53810418 |
T |
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| Q |
415 |
tttctattttattccacctcataaaaagaacataaccactagaaaaagatggaactacatataaagaggaaaggcatggtacattaacatataacagaca |
514 |
Q |
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| T |
53810417 |
tttctattttattccacctcataaaaagaacataaccactagaaaaagatggaactacatataaagaggaaaagcatggtacattaacatataacagaca |
53810318 |
T |
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| Q |
515 |
actctgtgagttggaatt |
532 |
Q |
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| T |
53810317 |
actctgtgagttggaatt |
53810300 |
T |
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