View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18587_high_7 (Length: 439)
Name: NF18587_high_7
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_high_7 |
 | |
|
| [»] scaffold0288 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 15208 - 14796
Alignment:
| Q |
17 |
gactttgagattgacatagtcattgagtttgagagatttgtaatgaccaaactaaaaagaggatgtggcgtagtcgccgactttaagatatacgtaatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
15208 |
gactttgagattgacatagtcattgagtttgagagatttgtaatgaccaaaccaaaaagaggatgtggcgtagtcaccgactttaagatataggtaatga |
15109 |
T |
|
| Q |
117 |
cggaatcaacagtggatttgacacaattactt-tgagnnnnnnnggataacaaaaaaggatttagagtagccatggactttaagatgttagcgatgacca |
215 |
Q |
| |
|
|||||||||| |||||||||||||||| | | |||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15108 |
cggaatcaactgtggatttgacacaatcaatactgagtttttttggataacaaaaaaggatgtagagtagccatcaactttaagatgttagcgatgacca |
15009 |
T |
|
| Q |
216 |
aactaaaagagaatttagcgtggtcaccaatttaaggtctaagtaataatggaataaaaagtagatttttgcaattactattaagt-----atttacaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15008 |
aactaaaagagaatttagcgtggtcaccaatttaaggtttaagtaataatggaataaaaagtagatttttgcaattactattaagtttatgatttacaca |
14909 |
T |
|
| Q |
311 |
aataatatgggatttgatcccgtattgcaagtccaaaacacaacccaaccaattcaataaagcttaagggctaatataaagaagattctagtctctaggt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14908 |
aataatatgggatttgatcccgtattgcaagtccaaaacacaacccagccaattcaataaagcttaagggctaatataaagaagattctagtctctaggt |
14809 |
T |
|
| Q |
411 |
attacctctttta |
423 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14808 |
attacctctttta |
14796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 18286 - 18218
Alignment:
| Q |
310 |
aaataatatgggatttgatcccgtattgcaagtccaaaacacaacccaaccaattcaataaagcttaag |
378 |
Q |
| |
|
|||| |||||||||| || || || |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18286 |
aaatgatatgggattggagccggtgttgcaagtccaaaacacaacccaaccaattaaataaagcttaag |
18218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University