View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_14 (Length: 346)
Name: NF18587_low_14
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 49766980 - 49767101
Alignment:
| Q |
160 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctgtatggatgatcaatgcattgcatgccatcaatggaatcatc |
259 |
Q |
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| T |
49766980 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttctatatggatgatcaatgcattgcatgccatcaatggaatcatc |
49767079 |
T |
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| Q |
260 |
ttcaacaccaatgttaactctt |
281 |
Q |
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| T |
49767080 |
ttcaacaccaatgttaactctt |
49767101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 49766818 - 49766881
Alignment:
| Q |
1 |
ttacagcagttgtagctgatacagtgttgatg---gaagaagaagaaggacaatgacgagtagt |
61 |
Q |
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| T |
49766818 |
ttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt |
49766881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 327
Target Start/End: Original strand, 49767119 - 49767147
Alignment:
| Q |
299 |
tcctttcataggttccatgtggaggatgt |
327 |
Q |
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| T |
49767119 |
tcctttcataggttccatgtggaggatgt |
49767147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 14137753 - 14137707
Alignment:
| Q |
162 |
agtttaccaagtttttcttgaagacaaaaagcacagatcccaccagg |
208 |
Q |
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| T |
14137753 |
agtttaccaagtttttcttgaagacaaaaagcacatataccaccagg |
14137707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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