View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18587_low_15 (Length: 337)
Name: NF18587_low_15
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_15 |
 | |
|
| [»] scaffold0651 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 22513508 - 22513814
Alignment:
| Q |
9 |
aattatactgcaaccattgttctctttttcattcacatgtaaaaactttgacgcatcacttctgcgtgtttctacttcaactgttccttctgttattaga |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
22513508 |
aattataccgcaaccattgttctctttttcattcacatgtaaaaactttgacgcatcacttctgcgtgtttctacttcaactgttcctgctgctatcaga |
22513607 |
T |
|
| Q |
109 |
atcctcactgcttgttgtaaaccagctttcatatttt-ctatatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaag |
207 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22513608 |
atcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaattcaatttgtagccgatcctttccttggcaatgtgttggtctagcaag |
22513707 |
T |
|
| Q |
208 |
gtaagcacatcattacaagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgac |
307 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22513708 |
gcaagcacatcattacgagtaacatagccataccaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgac |
22513807 |
T |
|
| Q |
308 |
caccaat |
314 |
Q |
| |
|
||||||| |
|
|
| T |
22513808 |
caccaat |
22513814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 322
Target Start/End: Complemental strand, 416868 - 416785
Alignment:
| Q |
239 |
accaatgacccataatttttccatctggtccatgattaaatgtgattaaattaccagcatagttatgaccaccaatatgagaac |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
416868 |
accaatgacccataatttttccatctggtccatgactaaatgtgattaaattgccagcatacttatgaccaccaatatgagaac |
416785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 417019 - 416960
Alignment:
| Q |
182 |
ccttggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccatacc |
241 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
417019 |
ccttggcaatgtgttggtctagcaaggcaggcacatcattaggagtaacatagccatacc |
416960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 405937 - 405879
Alignment:
| Q |
182 |
ccttggcaatgtgttggtctagcaaggtaagcacatcattacaagtaacatagccatac |
240 |
Q |
| |
|
|||||||||| ||||| || ||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
405937 |
ccttggcaatatgttgatccagcaaggcaggcacatcattaggagtaacatagccatac |
405879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 172
Target Start/End: Complemental strand, 31321633 - 31321523
Alignment:
| Q |
62 |
catcacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaatt |
161 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||| ||| ||||||||| || | | ||||||||||||||||| ||||||| ||| | ||||||||||| |
|
|
| T |
31321633 |
catcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctctctgtcaattgaatt |
31321534 |
T |
|
| Q |
162 |
caatttgtagc |
172 |
Q |
| |
|
||||||||||| |
|
|
| T |
31321533 |
caatttgtagc |
31321523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Complemental strand, 31333883 - 31333776
Alignment:
| Q |
65 |
cacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaattcaa |
164 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||| ||||| ||| || | ||||||||||| ||| ||| ||||||| ||| | || ||||||||||| |
|
|
| T |
31333883 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
31333784 |
T |
|
| Q |
165 |
tttgtagc |
172 |
Q |
| |
|
|||||||| |
|
|
| T |
31333783 |
tttgtagc |
31333776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 2041 - 2148
Alignment:
| Q |
65 |
cacttctgcgtgtttctacttcaactgttccttctgttattagaatcctcactgcttgttgtaaaccagctttcatattttctatatcaattgaattcaa |
164 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| ||| ||||| ||| || | ||||||||||| ||| ||| ||||||| ||| | || ||||||||||| |
|
|
| T |
2041 |
cacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctctttgtcgattgaattcaa |
2140 |
T |
|
| Q |
165 |
tttgtagc |
172 |
Q |
| |
|
|||||||| |
|
|
| T |
2141 |
tttgtagc |
2148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University