View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_20 (Length: 284)
Name: NF18587_low_20
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 40993557 - 40993303
Alignment:
| Q |
14 |
atcaatgtcaattccatctaaattatatgtcttgattatgcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagtta |
113 |
Q |
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| T |
40993557 |
atcaacgtcaattccatctaaattatacgtcttgattatgcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagtta |
40993458 |
T |
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| Q |
114 |
acggggtcgccttgaacagtgtctccaccaagactaagagctactttgacatttggattttgatttttgatggaagagacttcggaagggctaagatttt |
213 |
Q |
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| T |
40993457 |
acggggtcgccttgaacggtgtctccaccaagactaagagctactttgacatttggattttgatttttgatgaaagagacttcggaagggctaagatttt |
40993358 |
T |
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| Q |
214 |
gagtgtcccaaaagatgttgaagtttccatttgtgggagaaggaggagatgaagt |
268 |
Q |
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| T |
40993357 |
gagtgtcccaaaagatgttgaagtttccatttgtgggagaaggaggagatgaagt |
40993303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 265
Target Start/End: Complemental strand, 29059008 - 29058788
Alignment:
| Q |
45 |
ttgattatgcttgtgagtgaagaaaccgcgtttgaaacccaagaatcaatcgaagatggaatgaagttaacggggtcgccttgaacagtgtctccaccaa |
144 |
Q |
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| T |
29059008 |
ttgattatttttgtgagcgaagaaactgcgttagagagccatgattcaaccgaagatggatcgaagtaagcatagccaccttcaacactgtcacctccta |
29058909 |
T |
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| Q |
145 |
gactaagagctactttgacatttggattttgatttttgatggaagagacttcggaagggctaagattttgagtgtcccaaaagatgttgaagtttccatt |
244 |
Q |
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| T |
29058908 |
gactaagagctaccttaacatttggattttggctcttgatggatgaaacttgagaagggttaaggttttttgtgtcccaaaagatgttaaattttccatt |
29058809 |
T |
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| Q |
245 |
tgtgggagaaggaggagatga |
265 |
Q |
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| T |
29058808 |
ggtgggtgaaggagaagatga |
29058788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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