View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18587_low_23 (Length: 264)

Name: NF18587_low_23
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18587_low_23
NF18587_low_23
[»] chr2 (10 HSPs)
chr2 (3-118)||(10393384-10393498)
chr2 (161-242)||(10394259-10394340)
chr2 (161-213)||(43950424-43950476)
chr2 (161-216)||(43077702-43077757)
chr2 (161-215)||(33755334-33755388)
chr2 (161-213)||(41436158-41436209)
chr2 (201-252)||(6075517-6075568)
chr2 (161-216)||(24775784-24775839)
chr2 (161-215)||(44534459-44534513)
chr2 (161-213)||(40965093-40965145)
[»] chr7 (10 HSPs)
chr7 (161-252)||(45890834-45890925)
chr7 (161-216)||(37490594-37490649)
chr7 (161-215)||(44604454-44604508)
chr7 (174-218)||(29434569-29434613)
chr7 (161-213)||(40038085-40038137)
chr7 (161-216)||(30463092-30463147)
chr7 (161-215)||(2846652-2846706)
chr7 (174-216)||(29645223-29645265)
chr7 (163-216)||(18235266-18235319)
chr7 (161-216)||(7425853-7425909)
[»] chr4 (8 HSPs)
chr4 (161-250)||(2906705-2906794)
chr4 (163-218)||(4357641-4357696)
chr4 (161-216)||(35909549-35909604)
chr4 (161-212)||(54729460-54729511)
chr4 (163-218)||(17237117-17237172)
chr4 (161-216)||(27977223-27977278)
chr4 (162-216)||(4360385-4360439)
chr4 (170-216)||(40020933-40020979)
[»] chr3 (10 HSPs)
chr3 (161-216)||(54122200-54122255)
chr3 (161-250)||(39365013-39365103)
chr3 (161-216)||(9017877-9017932)
chr3 (161-216)||(55415415-55415470)
chr3 (161-216)||(10855070-10855125)
chr3 (161-216)||(11251103-11251158)
chr3 (161-216)||(21296479-21296534)
chr3 (161-216)||(33994733-33994788)
chr3 (161-216)||(39866529-39866584)
chr3 (161-208)||(54845492-54845539)
[»] chr5 (7 HSPs)
chr5 (170-215)||(41594833-41594878)
chr5 (161-216)||(11099454-11099509)
chr5 (161-213)||(28057807-28057859)
chr5 (168-213)||(24231089-24231134)
chr5 (163-216)||(35646068-35646121)
chr5 (164-211)||(5816814-5816861)
chr5 (161-216)||(33988276-33988331)
[»] chr1 (9 HSPs)
chr1 (161-215)||(8327794-8327848)
chr1 (161-213)||(32587844-32587896)
chr1 (161-216)||(42926210-42926265)
chr1 (161-215)||(28839416-28839470)
chr1 (161-218)||(36467172-36467229)
chr1 (161-213)||(46273239-46273291)
chr1 (161-216)||(52830391-52830446)
chr1 (161-215)||(51749160-51749214)
chr1 (163-212)||(6787327-6787376)
[»] chr8 (6 HSPs)
chr8 (161-216)||(29615874-29615929)
chr8 (161-216)||(139098-139153)
chr8 (163-213)||(45197690-45197739)
chr8 (177-218)||(138691-138732)
chr8 (164-216)||(31410587-31410639)
chr8 (161-213)||(32241400-32241452)
[»] scaffold0227 (1 HSPs)
scaffold0227 (161-209)||(8949-8997)
[»] scaffold0034 (1 HSPs)
scaffold0034 (161-216)||(98901-98956)
[»] chr6 (3 HSPs)
chr6 (161-216)||(31265855-31265910)
chr6 (163-216)||(2657977-2658030)
chr6 (161-213)||(7739494-7739546)
[»] scaffold0003 (1 HSPs)
scaffold0003 (175-216)||(352451-352492)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 10393384 - 10393498
Alignment:
Q  3 gaagcgattgattattgagattaattattggggtgatgggttgcagcaataatgacggacattagattgtccgatgataacctaacgttttttaacaatt 102  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  10393384 gaagcgattgattattgagattaatcattggggtgatgggttgcagcaacaatgac-gacattagattgtctcatgataacctaacgttttttaacaatt 10393482  T
Q  103 cgtgtgtgtggtatgt 118  Q
    |||| ||| |||||||    
T  10393483 cgtgcgtgcggtatgt 10393498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 10394259 - 10394340
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaa 242  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10394259 tgtataaaagaaggagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaa 10394340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 43950424 - 43950476
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||  ||| |||||||||||||| |||||||||||||||||||||||||    
T  43950424 tgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattg 43950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 43077702 - 43077757
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  43077702 tgtataaatgaatgagagagaaaaatagttttaaatgtacttgttaactattggtg 43077757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 33755388 - 33755334
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  33755388 tgtataaatgaaggagagagaaaaatgattttaagtgttattgttaagtattggt 33755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 41436209 - 41436158
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| |||| |||||||||| ||||||||| ||||||||||||||||||    
T  41436209 tgtataaatgaattagagagaaaa-taattttaagtgtttttgttaagtattg 41436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 6075568 - 6075517
Alignment:
Q  201 ttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagt 252  Q
    |||||||||||| ||| ||| | |||||||||||||||||| ||||||||||    
T  6075568 ttgttaagtattagtgcaaagtagaatatattaaattgggagtgatgaaagt 6075517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 24775784 - 24775839
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||||||||||||||||| ||   ||||||||||||||||    
T  24775784 tgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtg 24775839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 44534459 - 44534513
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| || ||| |||||| |||||||||||| |||||||||||||||    
T  44534459 tgtataaatgaaggacagaaaaaaatgattttaaatgttcttgttaagtattggt 44534513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 40965145 - 40965093
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| ||| |||||||||||||| |||||| ||  ||||||||||||||    
T  40965145 tgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 40965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 45890834 - 45890925
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagt 252  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||| |||| |  |||||||| |||||| ||||||||||||    
T  45890834 tgtataaaagaaggagagagaaaaatggttttaaatgcttttgttaagtattggttgaaagtaaaatatattgaattggaaatgatgaaagt 45890925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 37490594 - 37490649
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||    
T  37490594 tgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtg 37490649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 44604454 - 44604508
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  44604454 tgtataaatgaaggagagagaaaaatgattttaagtgttcttgttaagtattggt 44604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 29434569 - 29434613
Alignment:
Q  174 gagagagaaaaataattttaaatgtttttgttaagtattggtgga 218  Q
    |||||||||||||| |||||| || ||||||||||||||||||||    
T  29434569 gagagagaaaaatagttttaagtgcttttgttaagtattggtgga 29434613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 40038085 - 40038137
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| ||| || ||||||||||||||||||||| | |||||||||||||    
T  40038085 tgtataaatgaaggaaagagaaaaataattttaaatgatcttgttaagtattg 40038137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 30463147 - 30463092
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||||||||||||||| |||||| ||   ||||||||||||||||    
T  30463147 tgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtg 30463092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 2846652 - 2846706
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| |||||||||||||| |||||| || | |||||||||||||||    
T  2846652 tgtataaatgaacgagagagaaaaatagttttaagtgctcttgttaagtattggt 2846706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 29645223 - 29645265
Alignment:
Q  174 gagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  29645223 gagagagaaaattaattttaagtgttcttgttaagtattggtg 29645265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 18235319 - 18235266
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||| ||| |||||| |||||||||||||||||   ||||||||||||||||    
T  18235319 tataaatgaaggagagaaaaaaataattttaaatgcacttgttaagtattggtg 18235266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 7425853 - 7425909
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttg-ttaagtattggtg 216  Q
    |||||||| |||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  7425853 tgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtg 7425909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 250
Target Start/End: Complemental strand, 2906794 - 2906705
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaa 250  Q
    |||||||| ||||||||| |||||||  ||||||||||||| |||||||||||||| | | ||||||||||||||||| || ||||||||    
T  2906794 tgtataaatgaatgagagtgaaaaatggttttaaatgttttcgttaagtattggtgcatagtggaatatattaaattgtgagtgatgaaa 2906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 4357696 - 4357641
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 218  Q
    |||||| ||| |||||||||| || ||||||| |||||||||||||||||||||||    
T  4357696 tataaatgaaggagagagaaagatgattttaagtgtttttgttaagtattggtgga 4357641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 35909549 - 35909604
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||    
T  35909549 tgtataaatgaatgaaagataaaaataattttaagtgtatttgttaagtattggtg 35909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 54729460 - 54729511
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtatt 212  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||||||    
T  54729460 tgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtatt 54729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 17237172 - 17237117
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 218  Q
    |||||| ||| |||||||||||||| |||||| || |||||||||||||| |||||    
T  17237172 tataaatgaaggagagagaaaaatagttttaagtgattttgttaagtattagtgga 17237117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 27977278 - 27977223
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    ||||||||  ||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  27977278 tgtataaataaattagagtgaaaaatgattttaagtgtttttgttaagtattggtg 27977223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 4360385 - 4360439
Alignment:
Q  162 gtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    ||||||| |||||| ||||||||||  |||||| || ||||||||||||||||||    
T  4360385 gtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtg 4360439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 40020933 - 40020979
Alignment:
Q  170 gaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||||||||||||  |||| ||||||||||| |||||||||||    
T  40020933 gaatgagagagaaaaatggttttgaatgtttttgtcaagtattggtg 40020979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 54122200 - 54122255
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  54122200 tgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtg 54122255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 39365013 - 39365103
Alignment:
Q  161 tgtataaaagaatgagagagaaaaa-taattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaa 250  Q
    ||||||||  || |||||||||||| |  |||||| || | |||||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  39365013 tgtataaataaaggagagagaaaaagtggttttaagtgctcttgttaagtattggtgcaaagtggaatatattgaattgggaatgatgaaa 39365103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 9017932 - 9017877
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||||||||||||| |||||| || ||||||||||||||||||    
T  9017932 tgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtg 9017877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 55415415 - 55415470
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    ||||||||  ||||||||||||||||  |||||| |||||||||||||||||||||    
T  55415415 tgtataaataaatgagagagaaaaatggttttaactgtttttgttaagtattggtg 55415470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 10855125 - 10855070
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||||||||||||| |||||| ||||||| ||| |||||||||    
T  10855125 tgtataaatgaaggagagagaaaaatagttttaagtgtttttattatgtattggtg 10855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 11251103 - 11251158
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||||||| |||||| ||||||| || | ||||||||||||||||    
T  11251103 tgtataaatgaatgagagaaaaaaatgattttaagtgctcttgttaagtattggtg 11251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 21296479 - 21296534
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||| ||||| |||||||||| | ||||||||||||||||    
T  21296479 tgtataaatgaaggagagaggaaaatgattttaaatgctcttgttaagtattggtg 21296534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 33994788 - 33994733
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||||||||||||||||| ||   ||||||||||||||||    
T  33994788 tgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtg 33994733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 39866529 - 39866584
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| || ||||||||||| |||||| || ||||||||||||||||||    
T  39866529 tgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtg 39866584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 208
Target Start/End: Original strand, 54845492 - 54845539
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaag 208  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||    
T  54845492 tgtataaatgaaggagagagaaaaatagttttaagtgtttttgttaag 54845539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 41594833 - 41594878
Alignment:
Q  170 gaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  41594833 gaatgagagagaaaaataattttaaatgtttttgtcaagtattggt 41594878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 11099454 - 11099509
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||    
T  11099454 tgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtg 11099509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 28057807 - 28057859
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||    
T  28057807 tgtataaatgaaggagagagaaaaataattttaaatgtacttgttaagtattg 28057859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 24231134 - 24231089
Alignment:
Q  168 aagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||    
T  24231134 aagaatgagagagaaaaatgattttaactgttcttgttaagtattg 24231089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 35646068 - 35646121
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||| ||||||||||||||||| ||||||| || | ||||||||||||||||    
T  35646068 tataaatgaatgagagagaaaaatgattttaagtgatcttgttaagtattggtg 35646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 5816861 - 5816814
Alignment:
Q  164 ataaaagaatgagagagaaaaataattttaaatgtttttgttaagtat 211  Q
    ||||| ||| ||||||||||||| ||||||||||||||| ||||||||    
T  5816861 ataaatgaaggagagagaaaaatgattttaaatgtttttattaagtat 5816814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 33988331 - 33988276
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||| ||||||||  |||||| |||||||||||||||||||||    
T  33988331 tgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtg 33988276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 8327848 - 8327794
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||||||||||||||||||||||||| || | |||||||||||||||    
T  8327848 tgtataaatgaatgagagagaaaaataattttaagtgctcttgttaagtattggt 8327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 32587896 - 32587844
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||    
T  32587896 tgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattg 32587844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 42926265 - 42926210
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  42926265 tgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtatcggtg 42926210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 28839470 - 28839416
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||    
T  28839470 tgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggt 28839416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 36467172 - 36467229
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 218  Q
    |||||||| |||||||||||||||||| |||||| ||   ||||||||||||||||||    
T  36467172 tgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtgga 36467229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 46273291 - 46273239
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| |||| ||| |||||||||||||| ||||||||||| ||||||||    
T  46273291 tgtataaatgaataagatagaaaaataattttgaatgtttttgtcaagtattg 46273239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 52830391 - 52830446
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||||||||||||||| | ||  |||||||||||||||||    
T  52830391 tgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtg 52830446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 51749160 - 51749214
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 215  Q
    |||||||| ||| ||||||||||| | ||||||| |||| |||||||||||||||    
T  51749160 tgtataaatgaaggagagagaaaactgattttaagtgttcttgttaagtattggt 51749214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 6787376 - 6787327
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtatt 212  Q
    |||||| ||| |||||||||||||| |||||||||| |||||||| ||||    
T  6787376 tataaacgaaagagagagaaaaatagttttaaatgtatttgttaaatatt 6787327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 29615929 - 29615874
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| ||||||||||||||||||||||||   ||||||||||||||||    
T  29615929 tgtataaatgaaggagagagaaaaataattttaaatgcacttgttaagtattggtg 29615874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 139153 - 139098
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| |||||||||| |||||| |||||||||  | ||||||||||||||||    
T  139153 tgtataaatgaatgagagataaaaatgattttaaattctcttgttaagtattggtg 139098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 45197739 - 45197690
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||| |||||||||| |||||| ||||||| ||||||||||||||||||    
T  45197739 tataaatgaatgagaga-aaaaatgattttaagtgtttttgttaagtattg 45197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 138691 - 138732
Alignment:
Q  177 agagaaaaataattttaaatgtttttgttaagtattggtgga 218  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  138691 agagaaaaatgattttaagtgtttttgttatgtattggtgga 138732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 31410587 - 31410639
Alignment:
Q  164 ataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    ||||| ||| |||||||||||| | |||||| |||||||||||| ||||||||    
T  31410587 ataaatgaaggagagagaaaaacagttttaagtgtttttgttaaatattggtg 31410639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 32241400 - 32241452
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||| ||| |||||| |||||| ||||||| |||| |||||||||||||    
T  32241400 tgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattg 32241452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 8997 - 8949
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagt 209  Q
    |||||||| |||  |||||||||||||||||||| ||||||||||||||    
T  8997 tgtataaatgaagaagagagaaaaataattttaagtgtttttgttaagt 8949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 98956 - 98901
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||||||||||||||||| ||||||| || | ||| ||||||||||||    
T  98956 tgtataaatgaatgagagagaaaaatgattttaagtgctcttgataagtattggtg 98901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 31265910 - 31265855
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||| ||| |||||||||||||| |||||| || | ||||||||||||||||    
T  31265910 tgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtg 31265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 2658030 - 2657977
Alignment:
Q  163 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||| |||| |||||||||||| ||||||| |  ||||||||||||||||||    
T  2658030 tataaatgaataagagagaaaaatgattttaagtacttttgttaagtattggtg 2657977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 7739494 - 7739546
Alignment:
Q  161 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 213  Q
    |||||||  ||| |||| ||||||||| ||| |||||||||||||||||||||    
T  7739494 tgtataagtgaaagagatagaaaaatagtttaaaatgtttttgttaagtattg 7739546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 352451 - 352492
Alignment:
Q  175 agagagaaaaataattttaaatgtttttgttaagtattggtg 216  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  352451 agagagaaaaataattttgagtgtctttgttaagtattggtg 352492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University