View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_24 (Length: 258)
Name: NF18587_low_24
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3570997 - 3570757
Alignment:
| Q |
1 |
tatttgcagcataaagtgccttaggaattgtttattgttatgttattgttttttaactgctttaagatgatatgactaaatttccattatcactttttaa |
100 |
Q |
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| T |
3570997 |
tatttgcagcataaagtgccttaggaattgtttattgttatgttattgttttttaactgctttaagatgagatgactaaatttccattatcactttttaa |
3570898 |
T |
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| Q |
101 |
tccgtctcgataattttaatttctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaataacttcagatgtt |
200 |
Q |
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| T |
3570897 |
tccgtctcgataattttaatttctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaataacttcagatgtt |
3570798 |
T |
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| Q |
201 |
tcattcatggaggaggaaaagaataagatgttggagatatt |
241 |
Q |
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| T |
3570797 |
tcactcatggcggaggaaaagaataagatgttggagatatt |
3570757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 62 - 241
Target Start/End: Complemental strand, 1685640 - 1685467
Alignment:
| Q |
62 |
ttaagatgatatgactaaatttccattatcactttttaatccgtctcgataattttaattt-ctaacatacattttggcaatttaatttgcttcctaggt |
160 |
Q |
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| T |
1685640 |
ttaagatgacatgactaaatttccattatcactttttaacccgtctcgataattttaatttcctaacatacattttggttattttatttacttcctaggt |
1685541 |
T |
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| Q |
161 |
ttctggtggaagaaattatccagaaataacttcagatgtttcattcatggaggaggaaaagaataagatgttggagatatt |
241 |
Q |
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| T |
1685540 |
tgccggtggaagaaattat-----aataacttc--atgtttcattcatggagaaggaagagaataagatgttggagatatt |
1685467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 3560257 - 3560139
Alignment:
| Q |
123 |
ctaacatacattttggcaatttaatttgcttcctaggtttctggtggaagaaattatccagaaataacttc---agatgtttcattcatggaggaggaaa |
219 |
Q |
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||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| || |||||| | | |||||||||||||||||||||| |
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| T |
3560257 |
ctaacatacattttggctattttatttgcttcctaggttgctggtggaagaaattatccag-aacaacttcaatataagtttcattcatggaggaggaaa |
3560159 |
T |
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| Q |
220 |
agaataagatgttggagata |
239 |
Q |
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| T |
3560158 |
agaataagatgttggagata |
3560139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 3572845 - 3572795
Alignment:
| Q |
191 |
ttcagatgtttcattcatggaggaggaaaagaataagatgttggagatatt |
241 |
Q |
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| T |
3572845 |
ttcagatgtttcattcatgaaggaggaaaagaataagatgttagggatatt |
3572795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 3558470 - 3558530
Alignment:
| Q |
38 |
ttatgttattgttttttaactgctttaagatgatatgactaaatttccattatcacttttt |
98 |
Q |
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||||||| ||||||| ||||| |||| || |||||||| |||||||||||||||||||| |
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| T |
3558470 |
ttatgttgttgttttgcaactgttttaggaccatatgactgaatttccattatcacttttt |
3558530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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