View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18587_low_29 (Length: 236)

Name: NF18587_low_29
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18587_low_29
NF18587_low_29
[»] chr4 (11 HSPs)
chr4 (18-221)||(3549539-3549742)
chr4 (69-121)||(11917518-11917570)
chr4 (59-170)||(30207620-30207731)
chr4 (65-123)||(45128365-45128423)
chr4 (72-123)||(4071839-4071890)
chr4 (60-174)||(24160545-24160660)
chr4 (56-122)||(18630638-18630704)
chr4 (65-123)||(49219096-49219154)
chr4 (106-162)||(4471088-4471145)
chr4 (78-123)||(28232502-28232547)
chr4 (78-161)||(30024618-30024702)
[»] chr2 (12 HSPs)
chr2 (52-161)||(28933742-28933852)
chr2 (69-118)||(3423827-3423876)
chr2 (106-174)||(10150660-10150729)
chr2 (65-121)||(23143033-23143089)
chr2 (65-121)||(23554823-23554879)
chr2 (57-120)||(11513858-11513921)
chr2 (73-124)||(39929823-39929874)
chr2 (41-123)||(32694169-32694251)
chr2 (32-148)||(10143103-10143220)
chr2 (55-116)||(39983306-39983367)
chr2 (55-123)||(17952746-17952814)
chr2 (130-174)||(26484205-26484249)
[»] chr8 (3 HSPs)
chr8 (19-119)||(34770853-34770953)
chr8 (83-158)||(7026652-7026728)
chr8 (52-123)||(27728063-27728134)
[»] chr3 (12 HSPs)
chr3 (108-173)||(28283675-28283741)
chr3 (86-160)||(16790432-16790507)
chr3 (60-123)||(43116478-43116541)
chr3 (21-114)||(21872282-21872375)
chr3 (55-120)||(32555026-32555091)
chr3 (106-149)||(27294286-27294330)
chr3 (58-134)||(37788806-37788882)
chr3 (76-123)||(1395628-1395675)
chr3 (52-93)||(22214701-22214742)
chr3 (72-123)||(2318600-2318652)
chr3 (89-125)||(11613454-11613490)
chr3 (83-174)||(25185898-25185989)
[»] chr1 (5 HSPs)
chr1 (32-123)||(40304077-40304167)
chr1 (59-123)||(28467356-28467420)
chr1 (65-123)||(30371105-30371163)
chr1 (108-171)||(4202227-4202291)
chr1 (78-122)||(47877080-47877124)
[»] chr5 (7 HSPs)
chr5 (32-121)||(38047877-38047966)
chr5 (65-123)||(37526254-37526312)
chr5 (65-123)||(37588415-37588473)
chr5 (65-123)||(37690692-37690750)
chr5 (78-119)||(40120081-40120122)
chr5 (72-125)||(42181154-42181207)
chr5 (59-123)||(12595789-12595853)
[»] chr6 (5 HSPs)
chr6 (52-155)||(2727898-2728002)
chr6 (83-123)||(24782016-24782056)
chr6 (83-174)||(27889917-27890008)
chr6 (78-125)||(2027474-2027521)
chr6 (41-125)||(14492257-14492341)
[»] chr7 (3 HSPs)
chr7 (59-123)||(1417221-1417285)
chr7 (130-174)||(36537837-36537881)
chr7 (52-120)||(47046150-47046218)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 3549539 - 3549742
Alignment:
Q  18 ttatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatctttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549539 ttatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatctttt 3549638  T
Q  118 gttataaagaaacttatgcattagcacttatataataaatgcttaattaagttgtttgtacaacgagggcgcctagtatttgcttagaagctatgttggt 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3549639 gttataaagaaacttatgcattagcacttatataataaacgcttaattaagttgtttgtacaacgagggcgcctagtatttgcttagaagctatgttggt 3549738  T
Q  218 tcat 221  Q
    ||||    
T  3549739 tcat 3549742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 11917570 - 11917518
Alignment:
Q  69 aagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 121  Q
    |||||||| ||||||||||||||||| |||||| || ||||||||||||||||    
T  11917570 aagcaacttataggttatatgaaaataatttgactttattttatcttttgtta 11917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 170
Target Start/End: Original strand, 30207620 - 30207731
Alignment:
Q  59 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatataataaat 157  Q
    ||||| |||||| ||||| |||| |||||||||||   |||||||| ||||||| |||||||||| ||  ||| ||| ||| ||||||||||| |||| |    
T  30207620 tagcttatgaaaacaacttatagcttatatgaaaacagtttgattt-attttattttttgttatagaactaacatatacataagcacttatatgataagt 30207718  T
Q  158 gcttaattaagtt 170  Q
    |||||||||||||    
T  30207719 gcttaattaagtt 30207731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 45128365 - 45128423
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||| | |||| |||||||| ||| ||||||||||||||||||||||||||||    
T  45128365 atgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttata 45128423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 4071890 - 4071839
Alignment:
Q  72 caactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||| |||| |||||||||||| |||||| || ||||||||||||||||||    
T  4071890 caacttatagcttatatgaaaataatttgactttattttatcttttgttata 4071839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 174
Target Start/End: Original strand, 24160545 - 24160660
Alignment:
Q  60 agctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatataataaatg 158  Q
    |||| |||||| ||||| |||| ||| ||||||||  ||||| || || ||||||||||||||| || || |||||  || ||||||||||| ||||  |    
T  24160545 agcttatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagcttatttataagcacttatatgataagcg 24160644  T
Q  159 cttaattaagttgttt 174  Q
     |||||||||||||||    
T  24160645 tttaattaagttgttt 24160660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 18630704 - 18630638
Alignment:
Q  56 ggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttat 122  Q
    ||||||||  ||||| ||||| |||| ||||||||||| || |||| || |||||||||||||||||    
T  18630704 ggatagcttgtgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 49219154 - 49219096
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||||| |||| |||||||||||| |||||| || ||||||| ||||||||||    
T  49219154 atgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttata 49219096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 4471145 - 4471088
Alignment:
Q  106 attttatcttttgttataaagaaactt-atgcattagcacttatataataaatgctta 162  Q
    |||||||||||||||||||| | | || |||||| |||||||||||||||| ||||||    
T  4471145 attttatcttttgttataaaaatagtttatgcataagcacttatataataattgctta 4471088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 28232547 - 28232502
Alignment:
Q  78 ataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||| ||||||| |||| ||||||||||||||||||||||| ||||    
T  28232547 atagcttatatggaaataatttgatttgattttatcttttgctata 28232502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 161
Target Start/End: Complemental strand, 30024702 - 30024618
Alignment:
Q  78 ataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatataataaatgctt 161  Q
    |||| |||||||||||  |||| | || |||||||||||||||||| ||  ||||||||||| || |||||||| ||||| ||||    
T  30024702 atagcttatatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgctt 30024618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 28933852 - 28933742
Alignment:
Q  52 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatat 150  Q
    |||||||||||| |||||| ||| | |||  ||| |||||||| |||||||||||||||||||||||||||| ||  | ||||| ||| |||||||||||    
T  28933852 tctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagcttatacatgagcacttatat 28933753  T
Q  151 aataaatgctt 161  Q
    | ||| |||||    
T  28933752 agtaagtgctt 28933742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 3423827 - 3423876
Alignment:
Q  69 aagcaactcataggttatatgaaaatcatttgatttgattttatcttttg 118  Q
    |||||||| ||||||||||||||||| |||||| || |||||||||||||    
T  3423827 aagcaacttataggttatatgaaaataatttgactttattttatcttttg 3423876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 10150729 - 10150660
Alignment:
Q  106 attttatcttttgttataaaga-aacttatgcattagcacttatataataaatgcttaattaagttgttt 174  Q
    |||||||||||| ||||| | | ||||||| ||| | |||||||||||||| ||||||||||||||||||    
T  10150729 attttatcttttattatagaaataacttatacataaacacttatataataagtgcttaattaagttgttt 10150660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 23143033 - 23143089
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 121  Q
    |||||| ||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  23143033 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgtta 23143089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 23554823 - 23554879
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 121  Q
    |||||| ||||| |||| ||||| |||||  ||||||||||||||||||||||||||    
T  23554823 atgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgtta 23554879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 11513921 - 11513858
Alignment:
Q  57 gatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 120  Q
    ||||||| |||||| ||||| |||| |||||||||||  |||||| || |||||||||||||||    
T  11513921 gatagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 39929874 - 39929823
Alignment:
Q  73 aactcataggttatatgaaaatcatttgatttgattttatcttttgttataa 124  Q
    |||| |||| |||||| ||||  |||||||||||||||||||||||||||||    
T  39929874 aacttatagcttatataaaaacaatttgatttgattttatcttttgttataa 39929823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 32694251 - 32694169
Alignment:
Q  41 tccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||||| ||||||||||||||| ||| || ||||| |||  |||||| |||||  | |||||| ||||||||||||| ||||    
T  32694251 tccacaatctatctaggatagcttatgcaaacaacttataaattatataaaaatagtctgattttattttatcttttgatata 32694169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 10143220 - 10143103
Alignment:
Q  32 tatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaac 130  Q
    |||||||| |||| ||||| || | ||||||| ||||||  |||| |||| |||||| ||||   ||||| || |||||||||||||||||| ||  |||    
T  10143220 tatgacatatccataaactctccatgatagcttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataac 10143121  T
Q  131 ttatgcattagcacttat 148  Q
    |||| ||| |||||||||    
T  10143120 ttatacataagcacttat 10143103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 39983367 - 39983306
Alignment:
Q  55 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttt 116  Q
    ||||||||| |||||| ||||| |||| |||||||||||| |||| |||| |||||| ||||    
T  39983367 aggatagcttatgaaaacaacttatagcttatatgaaaattattttattttattttaccttt 39983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 17952746 - 17952814
Alignment:
Q  55 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||||||| |||||| || ||  ||| ||||||||||||  ||||| || ||||||||||||||||||    
T  17952746 aggatagcttatgaaaacatcttgtagcttatatgaaaatagtttgactttattttatcttttgttata 17952814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 26484205 - 26484249
Alignment:
Q  130 cttatgcattagcacttatataataaatgcttaattaagttgttt 174  Q
    ||||| ||| ||||||||||| ||||||| |||||||||||||||    
T  26484205 cttatccataagcacttatatgataaatgattaattaagttgttt 26484249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 34770953 - 34770853
Alignment:
Q  19 tatgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttg 118  Q
    |||||||| ||  |||||||||||||  |||| |||||||||||| |||||| ||||| |||| ||| |||||||  |||||| || |||||||||||||    
T  34770953 tatgaaaacagcttatgacatgtccatgaactctctaggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttg 34770854  T
Q  119 t 119  Q
    |    
T  34770853 t 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 7026728 - 7026652
Alignment:
Q  83 ttatatgaaaatcatttgatttgattttatcttttgttataa-agaaacttatgcattagcacttatataataaatg 158  Q
    |||||||||||  |||| | || ||||||||||||||||||| || | ||||||||| ||||||||||| |||||||    
T  7026728 ttatatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataaatg 7026652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 27728063 - 27728134
Alignment:
Q  52 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||||||||| |||||| ||||| |||  ||||||||||||  ||||| || |||||||||||| |||||    
T  27728063 tctaggatagcttatgaaaacaactaatactttatatgaaaatagtttgactttattttatctttttttata 27728134  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 28283675 - 28283741
Alignment:
Q  108 tttatcttttgttata-aagaaacttatgcattagcacttatataataaatgcttaattaagttgtt 173  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||||||| |||||||    
T  28283675 tttatcttttgttatagaagtaacttatgcataagcacttatatgataaacgcttaattgagttgtt 28283741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 16790432 - 16790507
Alignment:
Q  86 tatgaaaatcatttgatttgattttatcttttgttataaagaaa-cttatgcattagcacttatataataaatgct 160  Q
    ||||||||| ||||||||| ||||||||| |||||||||| | | ||||| ||| ||||||||||| |||||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataaatgct 16790507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 43116478 - 43116541
Alignment:
Q  60 agctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||| |||||| | ||| |||| ||||||||||||  |||||||||||||||||||||||||||    
T  43116478 agcttatgaaaacgacttatagcttatatgaaaattgtttgatttgattttatcttttgttata 43116541  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 21872282 - 21872375
Alignment:
Q  21 tgaaaatagtgtatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatct 114  Q
    |||||||||  ||||||||||||| ||||| || ||||||||| |||||| ||||| |||| |||||| ||||  ||||||  | |||||||||    
T  21872282 tgaaaatagcttatgacatgtccataaactttccaggatagcttatgaaaacaacttatagcttatatcaaaaaaatttgaccttattttatct 21872375  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 32555026 - 32555091
Alignment:
Q  55 aggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 120  Q
    |||||| ||||||||| ||||| |||| ||||| |||||| |||||| || |||||||||||||||    
T  32555026 aggataactcatgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgtt 32555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 27294330 - 27294286
Alignment:
Q  106 attttatcttttgttata-aagaaacttatgcattagcacttata 149  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||    
T  27294330 attttatcttttgttatagaagaaacttatgcataagcacttata 27294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 37788882 - 37788806
Alignment:
Q  58 atagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaagaaacttat 134  Q
    |||||| |||||| ||||| |||| ||||| |||||| ||| || || ||||||||||||||||||||  |||||||    
T  37788882 atagcttatgaaaacaacttatagattatacgaaaataattggactttattttatcttttgttataaaataacttat 37788806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 1395675 - 1395628
Alignment:
Q  76 tcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| |||||||||||| |||||| || ||||||||||||||||||    
T  1395675 tcatagcttatatgaaaataatttgactttattttatcttttgttata 1395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 22214701 - 22214742
Alignment:
Q  52 tctaggatagctcatgaaagcaactcataggttatatgaaaa 93  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
T  22214701 tctaggatagcttatgaaaacaacttataggttatatgaaaa 22214742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 2318652 - 2318600
Alignment:
Q  72 caactcataggttatatgaaaatcatttgatttgattttatctt-ttgttata 123  Q
    ||||| |||| |||||||||||  |||||||||||||||||||| ||||||||    
T  2318652 caacttatagtttatatgaaaacaatttgatttgattttatcttgttgttata 2318600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 11613490 - 11613454
Alignment:
Q  89 gaaaatcatttgatttgattttatcttttgttataaa 125  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  11613490 gaaaataatttgattttattttatcttttgttataaa 11613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 25185989 - 25185898
Alignment:
Q  83 ttatatgaaaatcatttgatttgattttatcttttgttataaagaaa-cttatgcattagcacttatataataaatgcttaattaagttgttt 174  Q
    |||||| |||| ||||||| || |||| ||||||||||||| | | | ||||| ||| ||||||||||| |||||  ||||||||||||||||    
T  25185989 ttatataaaaaccatttgactttattt-atcttttgttatataaatatcttattcataagcacttatatgataaacacttaattaagttgttt 25185898  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 40304077 - 40304167
Alignment:
Q  32 tatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||||||| ||| |||||||||||||||| | |||||| || || |||  |||||||||||  || |||||| ||||||||||||||||||    
T  40304077 tatgacatgcccataaactatctaggatagtt-atgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttata 40304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 28467356 - 28467420
Alignment:
Q  59 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||| |||||| |||||  ||| |||||||||||| |||||| || ||||||||||||||||||    
T  28467356 tagcttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 30371163 - 30371105
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||||| |||| |||||||||||  |||||| || ||||||||||||||||||    
T  30371163 atgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 4202227 - 4202291
Alignment:
Q  108 tttatcttttgttataaaga-aacttatgcattagcacttatataataaatgcttaattaagttg 171  Q
    |||||||||||||||| | | ||||||| | | ||||||||||| ||||| ||||||||||||||    
T  4202227 tttatcttttgttatagaaataacttatacttaagcacttatatgataaacgcttaattaagttg 4202291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 47877124 - 47877080
Alignment:
Q  78 ataggttatatgaaaatcatttgatttgattttatcttttgttat 122  Q
    |||| |||||||||||  ||||||||| |||||||||||||||||    
T  47877124 atagtttatatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 38047877 - 38047966
Alignment:
Q  32 tatgacatgtccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtta 121  Q
    ||||||||||||| || || || ||||||||| |||||| || |  ||||  ||||||||||| |||||| || ||||||||||||||||    
T  38047877 tatgacatgtccataagctctccaggatagcttatgaaaacagcatatagtatatatgaaaataatttgactttattttatcttttgtta 38047966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 37526254 - 37526312
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37526254 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37526312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 37588415 - 37588473
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37588415 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37588473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 37690692 - 37690750
Alignment:
Q  65 atgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||| ||||| |||| |||||||||||   ||||||||||||||||||||| |||||    
T  37690692 atgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattata 37690750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 40120122 - 40120081
Alignment:
Q  78 ataggttatatgaaaatcatttgatttgattttatcttttgt 119  Q
    |||| |||||||||||  ||||||||||||||||||||||||    
T  40120122 atagcttatatgaaaacaatttgatttgattttatcttttgt 40120081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 42181154 - 42181207
Alignment:
Q  72 caactcataggttatatgaaaatcatttgatttgattttatcttttgttataaa 125  Q
    ||||| |||| ||||||||||| ||||||| ||  |||||||||||||||||||    
T  42181154 caacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaa 42181207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 12595789 - 12595853
Alignment:
Q  59 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||| |||||| || ||||||| |||||||||||  |||| | || ||||||||||||||||||    
T  12595789 tagcttatgaaaccagctcatagtttatatgaaaacaatttaactttattttatcttttgttata 12595853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 2727898 - 2728002
Alignment:
Q  52 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata-aagaaacttatgcattagcacttatat 150  Q
    |||||||||||| |||||| ||||| |||| |||||| || |  |||||||||   |||||||||||||||| ||| | ||||| ||| |||||||||||    
T  2727898 tctaggatagcttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatagaagcagcttatacataagcacttatat 2727997  T
Q  151 aataa 155  Q
     ||||    
T  2727998 gataa 2728002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 24782056 - 24782016
Alignment:
Q  83 ttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  24782056 ttatatgaaaacaatttgatttgattttatcttttgttata 24782016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Original strand, 27889917 - 27890008
Alignment:
Q  83 ttatatgaaaatcatttgatttgattttatcttttgttataaaga-aacttatgcattagcacttatataataaatgcttaattaagttgttt 174  Q
    ||||||||||||  ||||| || ||||||||| |||||||| | | ||||| | ||| |||||| |||| |||||||||||||||||||||||    
T  27889917 ttatatgaaaatagtttgaatt-attttatctgttgttatagaaataacttgtacataagcactcatatgataaatgcttaattaagttgttt 27890008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 2027474 - 2027521
Alignment:
Q  78 ataggttatatgaaaatcatttgatttgattttatcttttgttataaa 125  Q
    |||||||||||||||||  ||||| || ||||||||||||||||||||    
T  2027474 ataggttatatgaaaatagtttgactttattttatcttttgttataaa 2027521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 14492341 - 14492257
Alignment:
Q  41 tccacaaactatctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttataaa 125  Q
    |||||||||| ||||||||| || |||||| || || |||| || ||| ||||  |||||| || ||||||||||||| ||||||    
T  14492341 tccacaaactctctaggataacttatgaaaacagcttatagcttgtatcaaaacaatttgacttcattttatcttttggtataaa 14492257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 1417285 - 1417221
Alignment:
Q  59 tagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgttata 123  Q
    ||||| |||||| ||||| || | |||||||||||  |||||| || ||||||||||||||||||    
T  1417285 tagcttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 36537881 - 36537837
Alignment:
Q  130 cttatgcattagcacttatataataaatgcttaattaagttgttt 174  Q
    ||||||||| |||||||||||||||||  || |||||||||||||    
T  36537881 cttatgcataagcacttatataataaagactcaattaagttgttt 36537837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 47046150 - 47046218
Alignment:
Q  52 tctaggatagctcatgaaagcaactcataggttatatgaaaatcatttgatttgattttatcttttgtt 120  Q
    |||||||||||| |||||| ||||||  || |||||||||||  |||||| || |||||||| ||||||    
T  47046150 tctaggatagcttatgaaaacaactcggagcttatatgaaaacaatttgactttattttatcctttgtt 47046218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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