View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_5 (Length: 530)
Name: NF18587_low_5
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_5 |
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| [»] scaffold0072 (2 HSPs) |
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Alignment Details
Target: scaffold0072 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 45316 - 45619
Alignment:
| Q |
16 |
cagatgtcacataatccacagatacagggaccaagacgtggaatgaggcataggattcctaacagaaagttcactgaggactctgttaaataggacaatc |
115 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45316 |
cagatgtcacgtaatccacagatccagggaccaagacgtggaatgaggcatatgattcctaacagaaagttcaatgaggactctgttaaataggacaatc |
45415 |
T |
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| Q |
116 |
atttgcattgttaaggggggaataatatttggtagaaatatggnnnnnnnnnnnntgaagctttatgcttttctgcactatcatttcattccctgtacct |
215 |
Q |
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| T |
45416 |
attagcattgttaaggggg-aataatatttggtagaattatggctctctctctcttaaagctttatgcttttctgcactatcatttcattccctgtacct |
45514 |
T |
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| Q |
216 |
ttcttcaattggttttaaccatttttccatcaataatattcagattattatctttttactatcatttcaatataacagtaccttttatcatatcaaatca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
45515 |
ttcttcaattggttttaaccatttttccatcaataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatcaaatca |
45614 |
T |
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| Q |
316 |
taaca |
320 |
Q |
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||||| |
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| T |
45615 |
taaca |
45619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0072; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 40484 - 40790
Alignment:
| Q |
16 |
cagatgtcacataatccacagatacagggaccaagacgtggaatgaggcataggattcctaacagaaagttcactgaggactctgttaaataggacaatc |
115 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40484 |
cagatgtcacgtaatccacagatccagggaccaagacgtggaatgaggcatatgattcctaacagaaagttcaatgaggactctgttaaataggacaatc |
40583 |
T |
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| Q |
116 |
atttgcattgttaaggggggaataatatttggtagaaatatggnnnnnnnnnnnn--tgaagctttatgcttttctgcactatcatttcattccctgtac |
213 |
Q |
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| T |
40584 |
attagcattgttaaggggg-aataatatttggtagaattatggctctctctctctctttaagctttatgcttttctgcactatcatttcattccctgtac |
40682 |
T |
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| Q |
214 |
ctttcttcaattggttttaaccatttttccatcaataatattcagattattatctttttactatcatttcaatataacagtaccttttatcatatcaaat |
313 |
Q |
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| T |
40683 |
ctttcttcaattggttttaaccatttttccatcaataatatttagattattatcattttactgtcatttcaatataacagtacctattatcatatcaaat |
40782 |
T |
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| Q |
314 |
cataacat |
321 |
Q |
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|||||||| |
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| T |
40783 |
cataacat |
40790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 320 - 501
Target Start/End: Original strand, 46381296 - 46381477
Alignment:
| Q |
320 |
ataatgcacatgtagtttgtgaactgacaaatattttgtgtgctacgagttcattcaattattttcaaagcttgagtggctgaactaaagtttacttcgt |
419 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46381296 |
ataatacacatgtagtttgtgaactgacaaatattttgtgtgctacgagttcattcaattattttcaaagcttgagtggctgaactaaagtttacttcgt |
46381395 |
T |
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| Q |
420 |
ccaaaatgttttttataacgaaaaataaaacataaggattgcatttaaatttatataatcactcctacaattcggaaacatt |
501 |
Q |
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| T |
46381396 |
ccaaaatgttttttataacgaaaaataaaacataaggattgcatttaaatttatataatcactcctacaattcggaaacatt |
46381477 |
T |
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