View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_6 (Length: 486)
Name: NF18587_low_6
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 50325780 - 50325318
Alignment:
| Q |
18 |
gtctcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaa |
117 |
Q |
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| T |
50325780 |
gtctcttcaagttgagagaatttatgattaccccattggaaggattctttccctgtgttttttacctgatgaaggaaaaaagacaacaattaaaccaaaa |
50325681 |
T |
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| Q |
118 |
agacagaacataacataaaaaggccagcatgtttttgcatatattgaaaa-gtacaatttcacgtaagcaactgtaaggcaacaactctcctgtacatat |
216 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50325680 |
agacagaacataaaataaaaaggccagcatgtttttgcatatattgaaaaagtacaatttcacgtaagcaactgtaaggcaacaactctcctgtacacat |
50325581 |
T |
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| Q |
217 |
gaactcaccattgcctcaatggatttactgctggtctctcctgtatgtgcaaaaaatcgaaagaaaatgttgttactattttaactcattttaagattgg |
316 |
Q |
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| T |
50325580 |
gaactcaccattgcctcaatagatttactgctggtctctcctgtatgtgcaaaaaatcgaaagaaaatgttgttactattttaactcattttaagattgg |
50325481 |
T |
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| Q |
317 |
tnnnnnnnnnnntctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagtttannnnnnnngtaattttagtatacctct |
416 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
50325480 |
taaaaaaaaaaatctcatatctagattcatattaaatatctatgctctgaatttactggttcagcatagttaattttttttgtaattttagtatacctct |
50325381 |
T |
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| Q |
417 |
aagaccatgaaaacgatttttcttggctccagatatttctggaggcattccaccagtattatc |
479 |
Q |
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| T |
50325380 |
aagaccatgaaaacgatttttcttggctccagatatttctggaggcattccaccagcattatc |
50325318 |
T |
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