View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18587_low_9 (Length: 422)
Name: NF18587_low_9
Description: NF18587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18587_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 51 - 410
Target Start/End: Original strand, 46894561 - 46894919
Alignment:
| Q |
51 |
tttcatttttcagaatcaaattaacacatcaagaaaaacaaataacaactcttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
150 |
Q |
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| T |
46894561 |
tttcatttttcagaatcaaattaacagatcaagaaaaacaaataacaacttttgtagcaccaacacttctcaacttgtctgatgtctggcacatgtcaat |
46894660 |
T |
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| Q |
151 |
gtccgacaccgatacatgtgattacaataaattgcgtcattttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtataagaac |
250 |
Q |
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| T |
46894661 |
gtacgacac-gatacatgtgattacactaaattgcgtcattttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtataagaac |
46894759 |
T |
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| Q |
251 |
atagcaacgaaacagacctggaagaccagaaggaatggaccatgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttgacatag |
350 |
Q |
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| T |
46894760 |
atagcaacgaaacagacctggaagaccagaaggaatggaccatgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttgacatag |
46894859 |
T |
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| Q |
351 |
cgttcaacggaaagcttgcttttaaatataatcgagcttcggtttgcaacaagatgatga |
410 |
Q |
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| T |
46894860 |
cgttcaacggaaagcttgcttttaaatataatcgagcttcggtttgcaacaagacgatga |
46894919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46894446 - 46894498
Alignment:
| Q |
1 |
ctattgttcttaccaaatcactttttgaaacatttcaataaacaaaatatttt |
53 |
Q |
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| T |
46894446 |
ctattgttcttaccaaatcactttttgaaacatttcaataaacataatatttt |
46894498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 32154686 - 32154630
Alignment:
| Q |
144 |
tgtcaatgtccgacaccgatacatgtgattacaataaattgcgtcattttatcaaat |
200 |
Q |
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| T |
32154686 |
tgtcaatgtccgacaccgagacatgtgattgcagtaaattgtgtcattttctcaaat |
32154630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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