View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18588_high_14 (Length: 389)
Name: NF18588_high_14
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 50148877 - 50148499
Alignment:
| Q |
1 |
gtatctaacacaatcaccaaatgtttatgttgctgtcaagttatctgatctccccactgtcaaataatgcatgtggcagattttagttttttgctccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148877 |
gtatctaacacaatcaccaaatgtttatgttgctgtgaagttatctgatctccccactgtcaaataatgcatgtggcagattttagttttttgctccatt |
50148778 |
T |
|
| Q |
101 |
attcttctgatttggatacgtatcttgaacatttcagttgaaatgtaagatttgaaacacgcataggacataacatggacacaagcattatcaataatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148777 |
attcttctgatttggatacgtatcttgaacatttcagttgaaatgtaagatttgaaacacgcataggacataacatggacacaagcattatcaataatga |
50148678 |
T |
|
| Q |
201 |
ttctgctaactttctccaagaggatttaattgtatctcattgattacgtataatgttgtgtcctagttaatagttatgctactcttttttcttctgttgt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50148677 |
ttctgctaactttctctaagaggatttaattgtatctcattgattacgtataatgttgtgtcctagttaatagttatgctactcttttttcttctgttgt |
50148578 |
T |
|
| Q |
301 |
tatgtttgataattcactgattctgaaatcagccactgcattctatattttgtcatttcatacgcatttattctctgtg |
379 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50148577 |
tatgtttgataattcactgattatgaaatcagccactacattctatattttgtcatttcatacacatttattctctgtg |
50148499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University