View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_15 (Length: 384)
Name: NF18588_high_15
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 2829905 - 2829536
Alignment:
| Q |
1 |
aggtgatgcattaaccagcattgagaagagattcagggatagtaacggacgcaaccaactttctgatggatctaaaaccatcccaatcaacnnnnnnntt |
100 |
Q |
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| T |
2829905 |
aggtgatgcattaaccagcattgagaagagattcagggatagtaacggacgcaaccaactttctgatggatctaaaaccatcccaatcaacaaaaaaatt |
2829806 |
T |
|
| Q |
101 |
gcttccagtcctcatcattcaaaagaaatggcaagtctgagagagaaaataaaaatgcttgaggtaactattccagcatcaatgatatgaagacataggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2829805 |
gcttccagtcctcatcattcaaaagaaatggcaagtctgagagagaaaataaaaatgcttgaggtaactattctagcatcaatgatatgaagacataggt |
2829706 |
T |
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| Q |
201 |
tg-nnnnnnnnnaagaaaatttattgctccctggatgctgttttctcttgtaatatttcagaacatatactatatatccttcattttctccttcttatgt |
299 |
Q |
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| T |
2829705 |
tgttttttttttaagaaaatttattgctccctggatgctgttttctcttgtaatatttcagaacatatactatatatccttcattttctccttcttatgt |
2829606 |
T |
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| Q |
300 |
taatataaaagattgtttatgtcagggcctgataaagtcaaaggaaactgccttggaaacttcaacaact |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829605 |
taatataaaagattgtttatgtcagggcctgataaagtcaaaggaaactgccttggaaacttcaacaact |
2829536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 40800658 - 40800725
Alignment:
| Q |
100 |
tgcttccagtcctcatcattcaaaagaaatggcaagtctgagagagaaaataaaaatgcttgaggtaa |
167 |
Q |
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|||||| | ||||||| | || ||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
40800658 |
tgcttcaattcctcataactccaaagaaatgacagatctgagagagaaaataaaaatgcttgaggtaa |
40800725 |
T |
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