View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_19 (Length: 346)
Name: NF18588_high_19
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 25 - 329
Target Start/End: Complemental strand, 24687253 - 24686943
Alignment:
| Q |
25 |
aaaatttaataaagttaaattgactggaatatttatgtcttggttacctggccaagtcattattagtgaaagttattggttaatatgtataatacatgta |
124 |
Q |
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| T |
24687253 |
aaaatttaataaagctaaattccgcagaatatccatgtcttggttgtctccctaagtcattgttagtgaaagttattggttaatatgtgtactacatgta |
24687154 |
T |
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| Q |
125 |
at-----atgaa-taattactaatgtaagctagtaatctcacaaatttatattaagtttaaagtttttaagccacgagtttaactgccaagaagctatca |
218 |
Q |
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| T |
24687153 |
atgtaatatgaaataattacttatgttagctaataatctcacaaatttatattaagttgaaagtttttaagccacgagtttaacttccaagaagctatca |
24687054 |
T |
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| Q |
219 |
acatggaaatcctgatgagaacattacattacccctaaccttatccacgaattacattgataaacccaagattaagaatccaaatttgtatgaaacaacg |
318 |
Q |
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| T |
24687053 |
acatggaaatcctgatgagaacattacattacccctaaccttatccacgaattacattgataaacccaagattaagaatccatatttgtatgaaacaaag |
24686954 |
T |
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| Q |
319 |
catgtgataac |
329 |
Q |
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| T |
24686953 |
catgtgataac |
24686943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 24687609 - 24687516
Alignment:
| Q |
15 |
aaaaatacctaaaattta--ataaagttaaattgactggaatatttatgtcttggttacctggccaagtcattattagtgaaagttattggtta |
106 |
Q |
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||||| |||||||||||| ||||| ||||||||| |||||||| ||||||||| | ||| ||||||||||||||||||| ||||||||||| |
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| T |
24687609 |
aaaaaaacctaaaatttataataaaattaaattgatcggaatattcatgtcttggctgtctgtccaagtcattattagtgaatgttattggtta |
24687516 |
T |
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