View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_21 (Length: 335)
Name: NF18588_high_21
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 29469191 - 29468891
Alignment:
| Q |
16 |
tttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttacacgagagggagaagtaagatctcgcaccattca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29469191 |
tttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttatacgagagggagaagtaagatctcgcaccattca |
29469092 |
T |
|
| Q |
116 |
aaaagagacataaaactagatgatgctccaactgtgatatatttaacgtttctcgcaaaccaaaatgactgattccaccactagaaacaacctgcttcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29469091 |
aaaagagacataaaactagatgatgctccaactgtgatatatttaaggtttcccgcaaaccaaaatgactgattccaccactagaaacaacctgcttcag |
29468992 |
T |
|
| Q |
216 |
ctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaaaagaagccatccctgcaaaaaagaaatacatgtgtcacgtga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29468991 |
ctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaaaagaagccatccctgcaaaaaagaaatacatgtgtcacgtga |
29468892 |
T |
|
| Q |
316 |
t |
316 |
Q |
| |
|
| |
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|
| T |
29468891 |
t |
29468891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 29474305 - 29474005
Alignment:
| Q |
16 |
tttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttacacgagagggagaagtaagatctcgcaccattca |
115 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29474305 |
tttctttcgccgtaggctatcttttcatggttctactgagaataaatcccctcaagtgagattttatacgagagggagaagtaagatctcgcaccattca |
29474206 |
T |
|
| Q |
116 |
aaaagagacataaaactagatgatgctccaactgtgatatatttaacgtttctcgcaaaccaaaatgactgattccaccactagaaacaacctgcttcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474205 |
aaaagagacataaaactagatgatgctccaactgtgatatatttaacgtttcccgcaaaccaaaatgactgattccaccactagaaacaacctgcttcag |
29474106 |
T |
|
| Q |
216 |
ctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaaaagaagccatccctgcaaaaaagaaatacatgtgtcacgtga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29474105 |
ctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaaaagaagccatccctgcaaaaaacaaatacatgtgtcacgtga |
29474006 |
T |
|
| Q |
316 |
t |
316 |
Q |
| |
|
| |
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|
| T |
29474005 |
t |
29474005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 279
Target Start/End: Complemental strand, 29444432 - 29444253
Alignment:
| Q |
100 |
gatctcgcaccattcaaaaagagacataaaactagatgatgctccaactgtgatatatttaacgtttctcgcaaaccaaaatgactgattccaccactag |
199 |
Q |
| |
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|||||| |||||||||| |||||| ||||||| || |||||||||| |||| ||| |||| ||| ||| || ||| |||||| | |||| || ||| |
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| T |
29444432 |
gatctcacaccattcaagaagagatataaaaccaggtgatgctccattcctgatcaattcaacgcttcccgcgaatcaacatgactaaatccatcattag |
29444333 |
T |
|
| Q |
200 |
aaacaacctgcttcagctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaaaagaag |
279 |
Q |
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||||||| |||||||||| ||||||||||||||||||| |||| ||||||| |||||||||||| || |||||| |
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| T |
29444332 |
aaacaacttgcttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaag |
29444253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 288
Target Start/End: Complemental strand, 29454365 - 29454251
Alignment:
| Q |
174 |
accaaaatgactgattccaccactagaaacaacctgcttcagctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatccttgagaa |
273 |
Q |
| |
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||||| |||||| | |||| ||||||||||||| |||||||||| | ||||| ||||||||||||| ||| |||||||||||||||||| | || |
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| T |
29454365 |
accaacatgactaaatccatcactagaaacaacttgcttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggac |
29454266 |
T |
|
| Q |
274 |
aagaagccatccctg |
288 |
Q |
| |
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|||||| |||||||| |
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| T |
29454265 |
aagaagtcatccctg |
29454251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 206
Target Start/End: Original strand, 29422246 - 29422407
Alignment:
| Q |
44 |
ggttctactgagaataaatcccctcaagtgagattttacacgagagggagaagtaagatctcgcaccattcaaaaagagacat-aaaactagatgatgct |
142 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||| ||||| | || |||||| | |||||||| |||||| |
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| T |
29422246 |
ggttctactgagaatgaatcccctc--gtgagattttacatgagagggaaaagtgtgatcttacaccaatgaagaagagagttaaaaactaggcgatgct |
29422343 |
T |
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| Q |
143 |
ccaactgtgatatatttaacgtttctcgcaaaccaaaatgactgattccaccactagaaacaac |
206 |
Q |
| |
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||| | ||| |||||||| ||| |||||| ||| |||||| | |||| ||||| ||||||| |
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| T |
29422344 |
ccatttcggatcaatttaacgcttcccgcaaatcaacatgactaaatccatcactacaaacaac |
29422407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 12019909 - 12019783
Alignment:
| Q |
169 |
cgcaaaccaaaatgactgattccaccactagaaacaacctgcttcagctgtaacacaaaggttcttccttcacttacttataatttcaatttaaatcctt |
268 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||||||| |||||||||| | ||| | ||||||||||||| |||| ||| ||||||||||||||| |
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| T |
12019909 |
cgcaaaccaacatgactaattccatcactagaaacaacttgcttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctt |
12019810 |
T |
|
| Q |
269 |
gagaaaagaagccatccctgcaaaaaa |
295 |
Q |
| |
|
|| |||||| |||||||| |||||| |
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| T |
12019809 |
tggacaagaagtcatccctgtaaaaaa |
12019783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 295
Target Start/End: Complemental strand, 11988579 - 11988316
Alignment:
| Q |
34 |
atcctttcatggttctactgagaataaatcccctcaagtgagattttacacgagagggagaagtaagatctcgcaccattcaaaaagagacataaaacta |
133 |
Q |
| |
|
||||||||| |||||||| |||| | |||||||||| |||||||| || | || || ||||||| |||||| || |||| || |||||| |||||||| |
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| T |
11988579 |
atcctttcacggttctaccgaga-tgaatcccctcatgtgagattctaaatgacagagagaagtgtgatctcacaacattaaagaagagagttaaaacta |
11988481 |
T |
|
| Q |
134 |
gatgatgctccaactgtgatatatttaacgtttctcgcaaaccaaaatgactgattccacca---ctagaaacaacctgcttcagctgtaacacaaaggt |
230 |
Q |
| |
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| |||||| ||| | || |||||| | ||| ||||||||| ||||| |||||| || ||| ||| ||| |||||||||| | |||||||| |
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| T |
11988480 |
ggtgatgcaccattcctaatcaatttaatgcttcctgcaaaccaacatgacaaattccatcatcactataaagaacttgcttcagctacacaacaaaggt |
11988381 |
T |
|
| Q |
231 |
tcttccttcacttacttataatttcaatttaaatccttgagaaaagaagccatccctgcaaaaaa |
295 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||||||||| || |||||| |||||||| |||||| |
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|
| T |
11988380 |
tcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatccctgtaaaaaa |
11988316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 12007414 - 12007285
Alignment:
| Q |
16 |
tttctttcgccgtaggctatcctttcatggttctactgagaataaatcccctcaagtgagattttacacgagagggagaagtaagatctcgcaccattca |
115 |
Q |
| |
|
|||||||| | |||||| ||||||||| |||||| | |||||| |||| ||||| ||||||||||||| |||| ||||| |||||| ||||||| | |
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| T |
12007414 |
tttctttcactgtaggcaatcctttcacggttctgccgagaatgaatctcctcatgtgagattttacatgagatatagaagagtgatctcacaccattaa |
12007315 |
T |
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| Q |
116 |
aaaagagacataaaactagatgatgctcca |
145 |
Q |
| |
|
| |||| | ||||||||| | |||||||| |
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|
| T |
12007314 |
agaagaaagttaaaactagttaatgctcca |
12007285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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