View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18588_high_25 (Length: 309)
Name: NF18588_high_25
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 8225366 - 8225627
Alignment:
| Q |
20 |
gactttgctgtatgaaggtttcgtttattgattgcagcaagaccagcctttgattgctccagcttgctagtccaaaattcaacccacttatttagaaacc |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8225366 |
gactttgttgtatgaaggtttcgtttattgattgcagcaagaccagcctttgattgctccagcttgctagtccaaaattcaacccacttatttagaaacc |
8225465 |
T |
|
| Q |
120 |
tatgttccttacacagttgattttcatgatcttccaacttaaccaaagaactaacatcatcgtgttgattattaacaaataatttttctattgaatcaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8225466 |
tatgttccttacacagttgattttcatgatcttccaacttaaccaaagaactaacatcatcgtgtagattattaacaaataatttttctattgaatcaag |
8225565 |
T |
|
| Q |
220 |
ccacgaaccttgaaaagaaaattgacgtagatcattcaccatatactttacctcagaattcc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8225566 |
ccacgaaccttgaaaagaaaattgacgtagatcattcaccatatactttacctcagaattcc |
8225627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 281
Target Start/End: Complemental strand, 8173132 - 8172964
Alignment:
| Q |
113 |
agaaacctatgttccttacacagttgattttcatgatcttccaacttaaccaaagaactaacatcatcgtgttgattattaacaaataatttttctattg |
212 |
Q |
| |
|
|||||| ||||||| ||||||| |||||| ||| ||||||||||||| |||| ||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
8173132 |
agaaacatatgttcattacacaattgattaacataatcttccaacttagccaaggaattaacatcattgtgtagattattaacaaataatttttctattg |
8173033 |
T |
|
| Q |
213 |
aatcaagccacgaaccttgaaaagaaaattgacgtagatcattcaccatatactttacctcagaattcc |
281 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| ||||| || ||||||| |||| |
|
|
| T |
8173032 |
aatcaagccacgaaccttcaaaagataattgacgtagatcattcactatatagattccctcagagttcc |
8172964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 281
Target Start/End: Complemental strand, 7591377 - 7591282
Alignment:
| Q |
186 |
gattattaacaaataatttttctattgaatcaagccacgaaccttgaaaagaaaattgacgtagatcattcaccatatactttacctcagaattcc |
281 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| || ||||||| |||| |
|
|
| T |
7591377 |
gattattagcaaataacttttctattgaatcaagccacgaaccttgaaatgataattgacgtagatcattcactatatagattccctcagagttcc |
7591282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 42505888 - 42505820
Alignment:
| Q |
202 |
tttttctattgaatcaagccacgaaccttgaaaagaaaattgacgtagatcattcaccatatactttac |
270 |
Q |
| |
|
|||||||||||||||||||||| |||||| || ||| |||| | | |||||||||||||||| |||| |
|
|
| T |
42505888 |
tttttctattgaatcaagccacagaccttggaatgaatgttgatgcaaatcattcaccatatacattac |
42505820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University