View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_27 (Length: 306)
Name: NF18588_high_27
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 38246888 - 38246814
Alignment:
| Q |
9 |
caagaatatgatgagagtattggatttaagggttgactttaatgttgaagaagtgaataacgatattgaagcatt |
83 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38246888 |
caagaaaatgatgagagtattggatttaagggttgactttaatgttgaagaagtgaataacgatattgaagcatt |
38246814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 38263158 - 38263084
Alignment:
| Q |
9 |
caagaatatgatgagagtattggatttaagggttgactttaatgttgaagaagtgaataacgatattgaagcatt |
83 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38263158 |
caagaaaatgatgagagtattggatttaagggttgactttaatgttgaagaagtgaataacgatattgaagcatt |
38263084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 38246573 - 38246529
Alignment:
| Q |
130 |
atgaatctagagatcaacttgtgttgcagttcataaaacttatgt |
174 |
Q |
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| T |
38246573 |
atgaagctagagatcaacttgtgttgcagttcataaaacttatgt |
38246529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 38262843 - 38262799
Alignment:
| Q |
130 |
atgaatctagagatcaacttgtgttgcagttcataaaacttatgt |
174 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38262843 |
atgaagctagagatcaacttgtgttgcagttcataaaacttatgt |
38262799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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