View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_39 (Length: 253)
Name: NF18588_high_39
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38955915 - 38956154
Alignment:
| Q |
1 |
ggaagaagggcatgtccaggagaaggtttagctcttcgagcaattagcatgacattagcattattggttcaatgctttgattggaaacgtataaacgatg |
100 |
Q |
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| T |
38955915 |
ggaagaagggcatgtccaggagaaggtttagctcttcgagcaattagcatgacattggcattattggttcaatgctttgattggaaacgtataaacgatg |
38956014 |
T |
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| Q |
101 |
aaaaaattgatatgtcagaacgagatgggttcactatgacaaagttactaccattgaaggccatgtgtaaaactcgtccggtcgtcaacaaggttttcaa |
200 |
Q |
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| T |
38956015 |
aaaaaattgatatgtcagaacgagatgggttcactatgacaaagttactaccattgaaggccatgtgtaaaactcgtccggtcgtcaacaaggttttcaa |
38956114 |
T |
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| Q |
201 |
gtaattcgtctaaagaaagtcaatcaaaaatgttctatgt |
240 |
Q |
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| T |
38956115 |
gtaattcatctaaggaaagtcaatcaaaaatgttatatgt |
38956154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38974783 - 38974697
Alignment:
| Q |
1 |
ggaagaagggcatgtccaggagaaggtttagctcttcgagcaattagcatgacattagcattattggttcaatgctttgattggaaa |
87 |
Q |
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||||||||||| ||||||||||||| || ||| | || ||||| ||| |||| || | |||||| |||||||||||||||||||| |
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| T |
38974783 |
ggaagaagggcttgtccaggagaagtgttggctatgcgtgcaataagcttgactttgggtttattgattcaatgctttgattggaaa |
38974697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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