View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_44 (Length: 238)
Name: NF18588_high_44
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 6145736 - 6145947
Alignment:
| Q |
17 |
atgcaggaccaagtagtgctacaaatcgg-ccgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattccttctccaac |
115 |
Q |
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| T |
6145736 |
atgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctccacatgttaggttattcctagaaggtcgtgtgaatcaaattccttctccaac |
6145835 |
T |
|
| Q |
116 |
aattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctccttcg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6145836 |
aattgttcctgtgtggcccagtagttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctccttcg |
6145935 |
T |
|
| Q |
216 |
tctcctcttgga |
227 |
Q |
| |
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|||||||||||| |
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| T |
6145936 |
tctcctcttgga |
6145947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 6126320 - 6126531
Alignment:
| Q |
17 |
atgcaggaccaagtagtgctacaaatcggc-cgaaattaatagccctccacatgttaggttattcctagaaggtggtgtgaatcaaattccttctccaac |
115 |
Q |
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|||||||||||||||||||||| | || | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||| |
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| T |
6126320 |
atgcaggaccaagtagtgctactactcagttcgaaattaatagccctccacatgttaggttattctcagaaggtcgtgtgaatcaaattgcttcaccaaa |
6126419 |
T |
|
| Q |
116 |
aattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctccttcg |
215 |
Q |
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| T |
6126420 |
aattgctcatgtgtggcccagtagttctataccaccacaacaaccaataacaacttcagacgcttcgctgagtaattataaccggctaaaccctcctccg |
6126519 |
T |
|
| Q |
216 |
tctcctcttgga |
227 |
Q |
| |
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| |||||||||| |
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| T |
6126520 |
tttcctcttgga |
6126531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 34283569 - 34283700
Alignment:
| Q |
65 |
acatgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaata |
164 |
Q |
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||||||||||||||| ||||||| |||||||| ||||||||||||||| ||| ||| ||||||||| | | ||| ||||||||| | |||| ||||| |
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| T |
34283569 |
acatgttaggttattgacagaaggtcttgtgaatcgaattccttctccaactatttttcatgtgtggcctattagttttgtaccaccacgacaaccaata |
34283668 |
T |
|
| Q |
165 |
atgacttcagacgcttcaccgagtaataatta |
196 |
Q |
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| T |
34283669 |
acgacttcagatcctccatcgagtaattatta |
34283700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 181
Target Start/End: Complemental strand, 34283003 - 34282889
Alignment:
| Q |
66 |
catgttaggttattcctagaaggtggtgtgaatcaaattccttctccaacaattgttcctgtgtggcccagtggttatgtaccaccgcaacaaacaataa |
165 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||||||||||| | ||||| | ||||||||| || ||| |||| |||| | |||| |||||| |
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| T |
34283003 |
catgttaggttattgacagaaggtcatgtgaatcaaattccttctccatctattgtgcatgtgtggcctggtagttttgta-caccacgacaaccaataa |
34282905 |
T |
|
| Q |
166 |
tgacttcagacgcttc |
181 |
Q |
| |
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|||||||||| |||| |
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|
| T |
34282904 |
cgacttcagacccttc |
34282889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 6152049 - 6152133
Alignment:
| Q |
143 |
tgtaccaccgcaacaaacaataatgacttcagacgcttcaccgagtaataattaccggctaaaccctccttcgtctcctcttgga |
227 |
Q |
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||||||||| | ||| |||||| ||||| | || |||||||||||||| |||||| ||||||||||||| | ||||||||||| |
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| T |
6152049 |
tgtaccaccacggcaaccaataacgactttaaacccttcaccgagtaattattaccagctaaaccctcctccagctcctcttgga |
6152133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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