View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_50 (Length: 227)
Name: NF18588_high_50
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27091491 - 27091271
Alignment:
| Q |
1 |
ctctaatggtgagtgttttgtgtgactgattctctaatagagagtgaaatccagaaaattatatcttacaacaaattaaaatgtcttatttgaagtaatt |
100 |
Q |
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| T |
27091491 |
ctctaatggtgagtgttttgtgtgactgattctctaatagagagtgaaatccagaaaattataccttacaacaaattaaaatgtcttatttgaagtaatt |
27091392 |
T |
|
| Q |
101 |
ttttaatacagggcaaacaaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
200 |
Q |
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| T |
27091391 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27091292 |
T |
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| Q |
201 |
aatcacttggaaccattaaag |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
27091291 |
aatcacttggaaccattaaag |
27091271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27186810 - 27187030
Alignment:
| Q |
1 |
ctctaatggtgagtgttttgtgtgactgattctctaatagagagtgaaatccagaaaattatatcttacaacaaattaaaatgtcttatttgaagtaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27186810 |
ctctaatggtgagtgttttgtgtgactgattctctaatagagagtgaaatccagaaaattataccttacaacaaattaaaatgtcttatttgaagtaatt |
27186909 |
T |
|
| Q |
101 |
ttttaatacagggcaaacaaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
200 |
Q |
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| T |
27186910 |
ttttaatacagggcaaacgaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
27187009 |
T |
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| Q |
201 |
aatcacttggaaccattaaag |
221 |
Q |
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| T |
27187010 |
aatcacttggaaccattaaag |
27187030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 9909611 - 9909725
Alignment:
| Q |
101 |
ttttaatacagggcaaacaaggcatatattctttccatttgatacaaaaaacgacactgctattaaagtggcaatggagatggtagaagaacttgaaatc |
200 |
Q |
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||||||||||||||| ||||| |||||| ||| |||||||| || ||||| |||||||| ||| | || |||| |||||||| ||||||||||||| |
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| T |
9909611 |
ttttaatacagggcacacaagaaatatatacttcccatttgacaccaaaaaggacactgccattgaggttgcaaatgagatggtcaaagaacttgaaatt |
9909710 |
T |
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| Q |
201 |
aatcacttggaacca |
215 |
Q |
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| | ||||||||||| |
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| T |
9909711 |
agtgacttggaacca |
9909725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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