View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_high_8 (Length: 446)
Name: NF18588_high_8
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 31213130 - 31213551
Alignment:
| Q |
13 |
aaaatgtgggtagttcaataagcatggatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatga |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213130 |
aaaatgtgggtagttcaataagcatgaatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatga |
31213229 |
T |
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| Q |
113 |
tccaactaatttaggtgaaaaaaggtcacctcatattgtgttggttttccaaagtaaacaacattgtcgctctacgtacaaatactcccatgcatcttga |
212 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31213230 |
tccaactaatttaggtgaacaaaggtcacctcatattgggttggttttccaaagtaaacaacattgtcgctctacgtacaaatactcccatgcatcttga |
31213329 |
T |
|
| Q |
213 |
aaacgatctggtcactgttgacttagaacacatgttgctaatttttctccctagggaatcatttatggagtatatcacaag----caacgtgggtgcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31213330 |
aaacgatctggtcactgttgacttagaacacatgttgctaatttttctccctagggaatcatttatggagtatatcacaagtggacaacgtgggtgcttt |
31213429 |
T |
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| Q |
309 |
ccccagagaattattaaattggaaggttatgctgtgcatccccccagattgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31213430 |
ccccagagaattattaaattggaaggttatgctgtgcatccccccagattgcatttagaggtcaaaaattgaggttatcgatggatatttaaggaggatt |
31213529 |
T |
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| Q |
409 |
tggagcaattaaacccacaaat |
430 |
Q |
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| T |
31213530 |
tggagcaattaaacccacaaat |
31213551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 31247902 - 31247975
Alignment:
| Q |
357 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaacccacaaat |
430 |
Q |
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|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||| || |||||||||||||| |
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| T |
31247902 |
ttgcatttggaggtaaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaacccacaaat |
31247975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 31247519 - 31247633
Alignment:
| Q |
13 |
aaaatgtgggtagttcaataagcatggatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatga |
112 |
Q |
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||||||| ||||||||||||||||| || ||| ||| |||| |||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |
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| T |
31247519 |
aaaatgtaggtagttcaataagcattgacccatcacctgttatgcatgaca---atttgataggcgttgcttgctgcttaacttttgtagcacgtgatgg |
31247615 |
T |
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| Q |
113 |
tccaactaatttaggtga |
130 |
Q |
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||||||||||||| |||| |
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| T |
31247616 |
tccaactaatttaagtga |
31247633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 422
Target Start/End: Complemental strand, 31264164 - 31264099
Alignment:
| Q |
357 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaac |
422 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||| |||| || |||||| |
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| T |
31264164 |
ttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaac |
31264099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 31304800 - 31304872
Alignment:
| Q |
357 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaacccacaaa |
429 |
Q |
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|||||||| ||||| || || |||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
31304800 |
ttgcattttgaggtaaagaactgtggttacagatggatatttgaggaggatctggagcaattaaacccacaaa |
31304872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 31247736 - 31247808
Alignment:
| Q |
198 |
tcccatgcatcttgaaaacgatctggtcactgttgacttagaacacatgttgctaatttttctccctagggaa |
270 |
Q |
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| T |
31247736 |
tcccatacatcttggaaaagatctggtcacagttgatttagatcacttgttgctaattcttttcactagggaa |
31247808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 31304675 - 31304718
Alignment:
| Q |
88 |
acttaacttttgtagcacatgatgatccaactaatttaggtgaa |
131 |
Q |
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| T |
31304675 |
acttaacatttgtagcacatgatgatccaaatagtttaggtgaa |
31304718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 424
Target Start/End: Original strand, 13615656 - 13615703
Alignment:
| Q |
377 |
ttgtggttatcgatggatatttaaggaggatttggagcaattaaaccc |
424 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
13615656 |
ttgtggttatcgttggatatttgaggaggatttggagcaattaaaccc |
13615703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 13615292 - 13615410
Alignment:
| Q |
13 |
aaaatgtgggtagttcaataagcatggatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatga |
112 |
Q |
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|||||||||||||||||||||| ||||| |||||||||| || ||| | || || || || || ||||| | |||||| ||||||||||||||||| |
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| T |
13615292 |
aaaatgtgggtagttcaataagaatggacccattacccatcatgcgtgaaaagaactgcattggtgtggcttgttgcttaacatttgtagcacatgatga |
13615391 |
T |
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| Q |
113 |
tccaactaatttaggtgaa |
131 |
Q |
| |
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||||| || |||||||||| |
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| T |
13615392 |
tccaaatagtttaggtgaa |
13615410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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